| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,372,081 | G→T | 6.1% | intergenic (+33/+79) | gdhB → / ← PP_2081 | NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,372,081 | 0 | G | T | 6.1% | 362.3 / 8.4 | 117 | intergenic (+33/+79) | gdhB/PP_2081 | NAD‑specific glutamate dehydrogenase/phosphoenolpyruvate synthase regulatory protein |
| Reads supporting (aligned to +/- strand): ref base G (57/52); new base T (2/6); total (59/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.63e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 | |||||||||||
Only 100 of 117 total aligned reads displayed.
CATGCTCGACGACCTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGAAAAA > NC_002947/2371934‑2372226 | cATGCTCGACGACCTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCAGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGt > 4:240179/1‑149 (MQ=255) tCGACGACCTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGAGAGGTAAAACAAAGCCCCGGCAGTGATGc > 7:336036/1‑149 (MQ=255) gacgacCTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCg > 5:208591/1‑149 (MQ=255) acgacCTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCgg < 1:314749/149‑1 (MQ=255) gacCTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCgggg < 6:169339/149‑1 (MQ=255) cTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑tt > 3:143591/1‑149 (MQ=255) cTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑tt > 6:83304/1‑149 (MQ=255) cTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAAAAAAGCCCCGGCATCACTGCCGGGGC‑tt > 3:130902/1‑149 (MQ=255) tGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑ttt > 7:187761/1‑149 (MQ=255) cgcAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑ttt < 2:298797/147‑1 (MQ=255) gcAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑tttttt < 8:187761/149‑1 (MQ=255) cAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAAAAAAGCCCCGGCATCACTGCCGGGGC‑tttgttt < 4:130902/149‑1 (MQ=39) aaTGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAAAAAAGCCCCGGCATCACTGCCGGGGC‑tttgtttt < 1:259400/149‑1 (MQ=39) aaTGCCACGGACACTGACTATGCGATGTACGAGGTGGCCACCCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCACGGCAGGGAGGCCGGGGC‑gttttttt > 7:131685/1‑149 (MQ=255) aTGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTg < 4:95652/149‑1 (MQ=255) aCGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGc > 8:222731/1‑149 (MQ=255) gggCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGGGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCt < 1:76640/149‑1 (MQ=255) gCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTgg > 1:291635/1‑149 (MQ=255) gCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTgg > 4:171802/1‑149 (MQ=255) gCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTgg > 3:249630/1‑149 (MQ=255) ctgtatATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGTCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTgggcg < 8:336036/144‑1 (MQ=255) aCTATGCGATGTACGCGGTGGCCAACCGGGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTgggcgg < 4:114352/147‑1 (MQ=255) aCTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTgggcgg < 1:344637/147‑1 (MQ=255) aCTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTgggcgg < 4:170839/147‑1 (MQ=255) tATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCa > 2:312805/1‑149 (MQ=255) gATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTcg > 8:24300/1‑149 (MQ=255) aTGTACGCGGTGGCCATCCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGcc < 8:132652/132‑1 (MQ=255) aTGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGcc > 7:132652/1‑132 (MQ=255) aTGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTcgc < 7:222731/149‑1 (MQ=255) tGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGCTTTTTTTTTGTATGCCTGGGCGGGCCATTTcgc < 7:166536/149‑1 (MQ=255) tGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTcgcg < 4:143010/149‑1 (MQ=255) tGTACGCAGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTcgcg < 3:240179/149‑1 (MQ=255) tACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCgg < 3:171346/148‑1 (MQ=255) ggTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGt < 2:51988/145‑1 (MQ=255) ggTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGt > 1:51988/1‑145 (MQ=255) ggTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAAc > 7:170969/1‑149 (MQ=255) tGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAAccc > 8:110441/1‑149 (MQ=255) gCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGc < 5:83304/149‑1 (MQ=255) cAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCgg < 6:318789/137‑1 (MQ=255) cAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCgg > 5:318789/1‑137 (MQ=255) cAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGc < 2:25374/147‑1 (MQ=255) cAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGc > 1:25374/1‑147 (MQ=255) cAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑‑TTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTc > 8:317858/1‑148 (MQ=255) cgcgAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTa > 5:109751/1‑148 (MQ=255) cgAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑tttttttt < 1:24028/105‑1 (MQ=255) cgAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑tttttttt > 2:24028/1‑105 (MQ=255) gCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑gggg > 6:320957/1‑149 (MQ=255) cTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTc < 6:180986/123‑1 (MQ=255) cTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTc > 5:180986/1‑123 (MQ=255) cTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑ggggg < 8:170969/149‑1 (MQ=255) tGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGt < 6:274420/102‑1 (MQ=255) tGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGt > 5:274420/1‑102 (MQ=255) gTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGggggc > 2:335888/1‑149 (MQ=255) aCCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGTCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTTAACCCGCTCCTACA‑GGGggggcgggg < 6:109751/149‑1 (MQ=255) aCCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTa < 4:58709/135‑1 (MQ=255) aCCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTa > 3:58709/1‑135 (MQ=255) ccTGGCCATGAGAGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAATCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTCGGCGGGCGATTTCGAGTGTGAACCCGCTCCTACA‑GGCggggcgtggc > 7:237870/1‑149 (MQ=255) ggCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGt > 7:323298/1‑149 (MQ=255) atctaTGAGCGGGGAGGCCGCGGTGGTGCGGTCCTTCGCCTTGTAGTGAGGTAAAACAATGCCCCGGCTTTGTGGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGGTCCTACA‑GGGGGGGCGGGGCTGt < 6:352606/145‑1 (MQ=255) gCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGt < 4:249630/148‑1 (MQ=255) ccATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTACGCCTGGGCGGGCCATTTCGCGGGTGAAc > 3:241593/1‑120 (MQ=255) ccATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTACGCCTGGGCGGGCCATTTCGCGGGTGAAc < 4:241593/120‑1 (MQ=255) cATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTAc > 7:270026/1‑149 (MQ=255) aTGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACt < 4:143591/149‑1 (MQ=255) tGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGt > 5:352606/1‑144 (MQ=255) cGGGCAGGCTGGGGTGGTGCCGTCCTGAGCTTTGTAGTTAGGTAAAACAAAGCCCGGGCAGTGATGCGGGGGC‑TTTTTTTTGTTTGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAAc < 1:312805/149‑1 (MQ=38) gcaggcagCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTgggcgg < 2:77218/92‑1 (MQ=255) gcaggcagCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTgggcgg > 1:77218/1‑92 (MQ=255) aggcagCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGtct > 1:60595/1‑149 (MQ=255) aggcagCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACAGtc > 8:298223/1‑148 (MQ=255) ggcagCGGTGGTGCCGTCCTTAGCCTTGAAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGtctc < 3:325432/149‑1 (MQ=255) cgttggtgCCGTCCTGACCCTTGTAGTGCCGTAAAACCAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTcc < 8:170210/144‑1 (MQ=39) ggtggtGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACg < 3:193603/149‑1 (MQ=255) gtgCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCtt > 1:143911/1‑149 (MQ=255) gtgCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTACTACAGGGGGGGGCGGGGCGGTTACTTGAACCGTCACTCCAGGCCt > 2:335826/1‑149 (MQ=255) cGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTc < 2:291635/149‑1 (MQ=255) gTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑ggg < 6:69615/106‑1 (MQ=255) tCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGa < 3:171802/149‑1 (MQ=255) cTGAGCCTTGTAGTGTGGTAAAACAACGCCCCGGCAGTGATGCCGGGGA‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCAc < 6:22722/136‑1 (MQ=255) cTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCAc > 5:22722/1‑136 (MQ=255) ccTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGa > 8:316741/1‑148 (MQ=255) ttGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTcc < 6:296122/89‑1 (MQ=255) ttGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTcc > 5:296122/1‑89 (MQ=255) ttAGGGATGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCtt < 8:270026/147‑1 (MQ=255) gTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCtt > 7:289469/1‑132 (MQ=255) tAGTGAGGTAAAACACAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTg < 7:110441/148‑1 (MQ=255) gTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCAGTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTATTTCGCCCAGGAt > 3:210371/1‑142 (MQ=255) aGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGa > 4:196516/1‑148 (MQ=255) gTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAAt > 1:290739/1‑149 (MQ=255) gTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAAt > 5:162505/1‑149 (MQ=255) aaaaCAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAAtct > 5:346684/1‑149 (MQ=255) accccacccccGGCTGTGATGCCGGGGA‑GTTTTTTTGTATGCCGGGGCGGGCCATTTCGCGGGTGCACCCGCTCCTACC‑GGGGGTGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATctct < 8:323298/142‑1 (MQ=255) aCAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACACGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCtt > 5:147503/1‑149 (MQ=255) aaGCCCCGGCATCACTGCCGGGGC‑TTTGTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCa < 7:337026/149‑1 (MQ=39) tcccccGGCCTAGATGCCTGGTC‑TGTTGTTTGTTTGCCTGGGCGGTCCATTTCGCGGGTGAACCCGCGCCTACA‑GGGGGGGCGGGGCGGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGTATCTTGGCGGAAATCTCTTCCAc < 8:131685/147‑1 (MQ=255) ccccGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTAGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCAcc > 1:245659/1‑148 (MQ=255) cGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTAGACAAGGATCTTGGCGGAAATCTCTTCCACCGaa > 1:218874/1‑148 (MQ=255) gCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGaaaaa < 1:335888/149‑1 (MQ=255) gCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCGGGGCGGGCCATTTCGCGGGTCACCCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGaaaaa < 5:320957/149‑1 (MQ=255) gCAGTGA‑GGCGGGGG‑GTTGTTTTGTAGGTCTGGGCGGGCCATCTCGCGGGGGACCCCGGGCCTACAGGGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGaaaaa < 4:204114/149‑1 (MQ=255) | CATGCTCGACGACCTGCGCAATGCCACGGGCACTGACTATGCGATGTACGCGGTGGCCAACCGCGAGCTGGTCGACCTGGCCATGAGCGGGCAGGCAGCGGTGGTGCCGTCCTGAGCCTTGTAGTGAGGTAAAACAAAGCCCCGGCAGTGATGCCGGGGC‑TTTTTTTTGTATGCCTGGGCGGGCCATTTCGCGGGTGAACCCGCTCCTACA‑GGGGGGGCGGGGCTGTTACTTGAACCGTCTCTCCACGCCTTTTTCGACCAGGATCTTGGCGGAAATCTCTTCCACCGAAAAA > NC_002947/2371934‑2372226 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |