| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,373,985 | T→C | 41.7% | R272R (CGT→CGC) | ppsA → | phosphoenolpyruvate synthetase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,373,985 | 0 | T | C | 41.7% | 76.8 / 180.6 | 156 | R272R (CGT→CGC) | ppsA | phosphoenolpyruvate synthetase |
| Reads supporting (aligned to +/- strand): ref base T (46/45); new base C (29/36); total (75/81) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.88e-01 | |||||||||||
Only 100 of 157 total aligned reads displayed.
GCGAAACCGTGGTGCAGGGTGCAGTCAACCCTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTGGGCCAAGGACGGT > NC_002947/2373837‑2374129 | gCGAAACCGTGGTGCAGGGTGCAGTCAACCCTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGt < 7:250186/149‑1 (MQ=255) aaaCCGTGGTGCAGGGTGCAGTCAACCCTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCg > 5:317537/1‑149 (MQ=255) aaCCGTGGTGCAGGGTGCAGTCAACCCTGACGAATTTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCg > 1:59016/1‑149 (MQ=255) aaCCGTGGTGCAGGGTGCAGTCAACCCTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCgt < 8:7900/149‑2 (MQ=255) cagggtgcagTCAACCCTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGt < 5:370314/149‑1 (MQ=255) ggtgcagTCAACCCTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGa < 7:136216/149‑1 (MQ=255) cagTCAACCCTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTc < 6:317537/149‑1 (MQ=255) cagTCAACCCTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTc < 5:104020/149‑1 (MQ=255) aCCCTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCg > 5:40738/1‑125 (MQ=255) aCCCTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCg < 6:40738/125‑1 (MQ=255) cccTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACcgcg < 4:326783/149‑1 (MQ=255) ccTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCgcgc > 6:79586/1‑149 (MQ=255) cTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGGCGCACGCGcc > 6:254119/1‑149 (MQ=255) cTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGcc > 4:63213/1‑149 (MQ=255) tGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGcc > 6:279601/1‑148 (MQ=255) gAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAgcg > 5:27116/1‑149 (MQ=255) a‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAgcgcg < 6:27116/149‑1 (MQ=255) ttCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAgcgcg > 7:171921/1‑148 (MQ=255) cTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCa < 7:301258/148‑1 (MQ=255) tACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGCCCGCGCCGAGCGCGCACg > 3:43313/1‑149 (MQ=255) acaAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCt < 7:277214/147‑1 (MQ=255) acaAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCt > 8:277214/1‑147 (MQ=255) acaAGAACACCCTGCAGGCCGGCCGCCCCGCCATCCTGCGCCGCAACCTCGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGc > 1:202143/1‑149 (MQ=255) caAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGcc > 3:19211/1‑149 (MQ=255) aaGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCt > 8:278180/1‑149 (MQ=255) aaGAACACCCTGCAGGACGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCt > 4:353505/1‑149 (MQ=255) gAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGa < 1:243373/149‑1 (MQ=255) gAACACACTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTAAGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTATGCCTGa > 1:292789/1‑149 (MQ=255) aaCACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGAc < 1:139746/149‑1 (MQ=255) acacCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGAcc < 8:106845/149‑1 (MQ=255) acacCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGAcc < 5:287334/149‑1 (MQ=255) acacCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGAcc < 5:279601/149‑1 (MQ=255) cacCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGAcc > 2:254650/1‑148 (MQ=255) cacCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGAcc > 4:60369/1‑148 (MQ=255) gcgCAGGATGGCCGGGCGGCCGGCCTGCGCCGCAACCTGGGCAGCAAAGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGCCCGATGc > 1:83998/3‑149 (MQ=255) aggatggccgggcGGCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGc > 7:25837/6‑149 (MQ=255) tGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGcc > 7:194377/1‑149 (MQ=255) gCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATGTGTCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGcc > 1:102987/1‑149 (MQ=255) aGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAg > 4:181643/1‑149 (MQ=255) aGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAg < 5:79586/149‑1 (MQ=255) gccggccgCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCg < 8:215862/145‑1 (MQ=255) gccggccgCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCg > 7:215862/1‑145 (MQ=255) cggccgCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCa < 6:180415/149‑1 (MQ=255) cggccgCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGt > 5:188615/1‑147 (MQ=255) ccGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTc > 1:278340/1‑90 (MQ=255) ccGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTc < 8:141814/90‑1 (MQ=255) cGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTg < 2:29743/149‑1 (MQ=255) cGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTg < 8:171921/149‑1 (MQ=255) ggCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAg < 7:222306/145‑1 (MQ=255) ggCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGc > 2:338014/1‑115 (MQ=255) gCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGc > 4:61403/1‑149 (MQ=255) ccATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGcc < 8:25837/149‑1 (MQ=255) aTCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCaa < 3:60840/149‑1 (MQ=255) cgccgcAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAgg < 1:334065/148‑1 (MQ=255) cgccgcAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGcctgcttg < 3:63213/147‑7 (MQ=255) gccgcAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGTGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGcc < 5:317445/149‑1 (MQ=255) gccgcAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGCCCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGcc < 2:83998/149‑1 (MQ=255) gcAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATg < 3:60369/149‑1 (MQ=255) aaCCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCt < 6:134291/131‑1 (MQ=255) aCCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGatc < 4:19211/149‑1 (MQ=255) ggCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGatcatc < 3:66753/147‑1 (MQ=255) agcaAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGagca < 6:308278/149‑1 (MQ=255) caAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGagcag > 6:294352/1‑148 (MQ=255) gATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGatc < 5:203728/133‑1 (MQ=255) gATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGatc > 6:203728/1‑133 (MQ=255) gATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAgg < 2:129163/125‑1 (MQ=255) aTCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCa < 5:254119/149‑1 (MQ=255) aTCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGc < 2:305177/121‑1 (MQ=255) aGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAgcgc < 5:359476/149‑1 (MQ=255) aGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAgcgc > 3:299606/1‑149 (MQ=255) gatg‑atCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAg > 5:71796/1‑115 (MQ=255) gatg‑atCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGc < 2:245495/76‑1 (MQ=255) tCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATg > 7:9450/1‑149 (MQ=255) tCTACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTg > 1:123442/1‑104 (MQ=255) cTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATg > 1:24966/1‑148 (MQ=255) tACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGa > 6:62190/1‑149 (MQ=255) tACGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGa > 3:218731/1‑118 (MQ=255) cGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGag > 1:230713/1‑124 (MQ=255) cGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGag < 2:230713/124‑1 (MQ=255) cGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATg < 7:123367/145‑1 (MQ=255) cGGCGACGAGGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATg < 1:317405/145‑1 (MQ=255) cGGCGAAGATGCTAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCATGCCATGATCATCGATCAGCACTACCAGCGCCCGATg < 3:113121/145‑1 (MQ=255) cgaGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGt < 3:353505/149‑1 (MQ=255) aGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTgg < 6:230126/149‑1 (MQ=255) aGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTgg < 1:137562/149‑1 (MQ=255) aGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTgg < 5:294352/149‑1 (MQ=255) gCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTGGGc < 8:246855/149‑1 (MQ=255) tAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTGGAcc > 4:281820/1‑148 (MQ=255) tAAGGCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTGGGcc > 3:262598/1‑148 (MQ=255) aGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGa < 4:246746/139‑1 (MQ=255) aGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGa > 3:246746/1‑139 (MQ=255) aGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTGGGCCAAg > 7:4847/1‑149 (MQ=255) ggCCGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTGGGCCAAg > 8:20485/1‑148 (MQ=255) cGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGTCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACAt > 4:87898/1‑132 (MQ=255) cGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGTCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACAt < 3:87898/132‑1 (MQ=255) cGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTGGGCCAAGGAc < 8:158463/148‑1 (MQ=255) cGGTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTGGGCCAAGGACg > 7:158463/1‑149 (MQ=255) gTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGt < 2:177654/135‑1 (MQ=255) gTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGt > 1:177654/1‑135 (MQ=255) gTCGCTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTGGGCCAAGGACGGt > 6:78073/1‑149 (MQ=255) | GCGAAACCGTGGTGCAGGGTGCAGTCAACCCTGACGAA‑TTCTACGTGCACAAGAACACCCTGCAGGCCGGCCGCCCGGCCATCCTGCGCCGCAACCTGGGCAGCAAGGCGATCAAGATG‑ATCTACGGCGACGAGGCTAAGGCCGGTCGTTCGGTCAAGACCGTCGAAGTCGACCGCGCCGAGCGCGCACGCTTCTGCCTGACCGATGCCGAGGTCAGCGAGCTGGCCAAGCAGGCCATGATCATCGAGCAGCACTACCAGCGCCCGATGGACATCGAGTGGGCCAAGGACGGT > NC_002947/2373837‑2374129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |