| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,089 | T→C | 13.9% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,089 | 0 | T | C | 13.9% | 597.6 / 74.4 | 254 | N865N (AAT→AAC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (115/102); new base C (17/18); total (134/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 | |||||||||||
Only 100 of 255 total aligned reads displayed.
GCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGT > NC_002947/196944‑197237 | gCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATcc > 3:22097/1‑148 (MQ=34) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc > 3:300814/1‑149 (MQ=34) cAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAc < 2:189414/149‑1 (MQ=34) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc > 7:214169/1‑149 (MQ=35) aaaCCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTAGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc > 3:330976/1‑149 (MQ=25) cATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCgg > 6:233976/1‑149 (MQ=37) ttACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt < 7:274229/149‑1 (MQ=37) ttGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc > 8:339586/1‑148 (MQ=37) tGAAGCCGGCAAGAACCAGGTCAGCGTGTATTTCCAGACCCAGTCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAcc < 8:271787/148‑1 (MQ=11) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGACACAGGCGGTAATTTCGAGCAACTGACACCGAATCCGACCCCGGATCAGACCAc > 8:258358/1‑148 (MQ=255) aaGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCAACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCAc > 6:185992/1‑148 (MQ=37) ccGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGAt > 5:214002/1‑148 (MQ=37) gCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 1:338687/149‑1 (MQ=37) gACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACTGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACt < 2:255514/149‑1 (MQ=17) gACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACt > 1:249703/1‑149 (MQ=35) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCa < 6:138600/136‑1 (MQ=34) cccAGGGCAGCGTCGATTTCAAGACCCCGGCGAATGACGTCAACAACAACGGTTCGACCGTCAGCGAC‑ACCATCGAGAACGCCACAGGAGGTAATTTCCAGCAACTGACCCCGAATACGACCCCGACTCAGACCACGATCAACGACTCg > 7:270647/1‑149 (MQ=11) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGt < 3:27183/149‑1 (MQ=34) gCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 1:15561/149‑1 (MQ=35) gCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt < 7:99691/149‑1 (MQ=35) gCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATACGACCCCGGCTCAGACCa > 6:163319/1‑126 (MQ=25) gTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGccac > 3:174333/1‑149 (MQ=39) gATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCcaccac < 4:330081/149‑1 (MQ=39) aTTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCaccacc > 5:125062/1‑149 (MQ=39) aTTTCCAGACCCCGACGAATGACGTCTACAACAACGGTTCGACCGTCAGCGGC‑ACCATCTAGAACCCCACAGGCGGTAATTAAGAGCAACTGACCCCGAATCACACCCCCTCTAAGACCACGATCAACGACTCCGTCGATGCCaccacc > 6:213174/1‑149 (MQ=14) ttCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGAt > 1:182324/1‑138 (MQ=11) tCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAAc < 8:22164/125‑1 (MQ=35) tCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgc < 3:55013/148‑1 (MQ=39) tCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgc > 8:70673/1‑148 (MQ=39) ccAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCGACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcccg > 1:266564/1‑149 (MQ=255) cccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGa > 6:302574/1‑149 (MQ=39) ccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGAc > 2:219729/1‑149 (MQ=39) ccGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGAc < 3:120704/149‑1 (MQ=39) cGGCGAATGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACg > 3:344760/1‑149 (MQ=21) ggCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcg > 4:112360/1‑137 (MQ=40) gCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGc < 5:268917/149‑1 (MQ=39) gAATGACGGCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGa < 4:274014/149‑1 (MQ=38) aTGACGTCTACAACAACGGTTCGACTGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGc > 1:85116/1‑149 (MQ=21) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCCCGACCCTGACGGCGAGc > 4:191551/1‑149 (MQ=37) cGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGt < 3:70883/149‑1 (MQ=37) gTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTc < 7:70673/149‑1 (MQ=37) acaacaACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGCCGTTAATTTCGAGCAACTGAACCCGAAAACGACCCCGGAGAAGACCACGATCAACGACTAGGTCGATGCCACCACCCCGACCCTGACGGAGAGCCCCTCCGt > 7:316923/1‑148 (MQ=11) caacaaCGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTTGGTCa < 1:279993/149‑1 (MQ=37) aacaacGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCAc > 2:53959/1‑149 (MQ=37) aacaacCGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCCGTAAATTCGAGCAACTGACCCCGAATCCCACCCCGGCTCAGACCACGATCAACGCCTCGGTCGAAGCCACCACCGCGACCCTGACCGCCAGCCCGTCGGTCAc > 4:46807/1‑149 (MQ=11) caacGATTCGACCGTCAGCGTC‑ACCATCGACAAAGCCACAGGAGCTAAATTCCAGCAACAGACCCCGAATCCGACCCCGGCTCAGACCACTATCAACGACTCGCTCGATGCCACCACCGCGACCCTGACGGCGAGACCGTCCGTCAcc > 3:124261/1‑148 (MQ=11) aacGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCg > 3:206240/1‑148 (MQ=37) cGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 8:913/149‑1 (MQ=37) gACCGTGAGCGTC‑ACCATCGAGTAGGCCACAGGAGGTAATTTCGAGCAACTGTCCCGGAATCCGACCATGGCTCTGACCAGGATCAACGACTCGGTCGATGCGACCACCGCGACCCTGACGGCGAGCGCGTCGGTCACCGAAGgcggcg < 4:124261/149‑1 (MQ=11) gACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 6:318786/148‑1 (MQ=37) gACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCCCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 3:191551/148‑1 (MQ=37) aCCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGgcggcg > 8:135430/1‑148 (MQ=37) cGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTaa < 5:302574/149‑1 (MQ=38) gTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 4:98458/144‑1 (MQ=37) gTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc > 3:98458/1‑144 (MQ=37) gTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt > 1:361732/1‑149 (MQ=21) tCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATc < 4:344760/149‑1 (MQ=255) aGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCAc > 2:30463/1‑149 (MQ=21) aGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc < 2:266564/149‑1 (MQ=39) gCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc > 6:51552/1‑148 (MQ=38) gTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAt > 4:353386/1‑143 (MQ=37) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTaa > 6:110952/1‑137 (MQ=37) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 2:101221/1‑149 (MQ=37) cATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCg > 8:321688/1‑149 (MQ=37) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgcg > 1:258307/1‑95 (MQ=37) tCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACcgcg < 2:258307/95‑1 (MQ=37) gagaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAc < 7:151263/149‑1 (MQ=17) gaACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGAccc < 5:65431/149‑1 (MQ=37) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:219729/149‑1 (MQ=17) cGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGa < 7:138588/149‑1 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg > 5:361246/1‑149 (MQ=37) gCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg > 2:226086/1‑149 (MQ=37) ccACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg > 5:38220/1‑148 (MQ=37) ccACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGc < 4:206240/149‑1 (MQ=37) cacaGGCGGTAATTTCGAGCTACTGACCCCGAATCCGACCCAGGCTCAGACCACGAACAACGACTAGGTCGATGACACCACCGCGACCCTGAAGGCGAGCCCGTCGCTCACCGAAGGCGGCGTAATCAACTACACCGTGACCATGAGc > 5:166716/1‑148 (MQ=21) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCa < 4:22097/149‑1 (MQ=37) aGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGa > 4:63811/1‑137 (MQ=25) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg > 8:109257/1‑140 (MQ=34) ggTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAg < 7:109257/140‑1 (MQ=34) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 8:56392/149‑1 (MQ=34) gTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGcc < 4:317552/149‑1 (MQ=34) gTAATTTCGAGCAACTGACCCCGAATCCGACCACGGCTCAGACCACGATCAACGACTAGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAAACACCTACACCGTGACCCTGAGCAATCCAGcc > 7:54495/1‑149 (MQ=255) tAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGccc < 2:325647/149‑1 (MQ=34) tAATTTCGAGCAACTGACACCGAATCCGACCCCGGCTCAGACGACGATCAACGACTCTGTCGATGCCACCTCCGCGACGCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTTATCa < 5:139616/119‑1 (MQ=11) tttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGa > 2:145424/1‑149 (MQ=34) tttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGa > 6:269206/1‑149 (MQ=34) ttCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGAc > 6:68705/1‑149 (MQ=34) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc > 4:289243/1‑113 (MQ=35) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAc < 3:289243/113‑1 (MQ=35) gAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGc < 5:13366/148‑1 (MQ=34) aGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg < 1:119271/149‑1 (MQ=34) gCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCgg < 7:321688/149‑1 (MQ=34) aaCTGACCCCGAACCCGACCCCGGGTCAGACCACGATCAACGACTCGGTCGATGCCACCACAGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCAGCTACACCGTGACCCTGAGCAATCCTGCCGAGACGCCGGtg < 5:23352/149‑2 (MQ=11) cTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGAc > 8:187040/1‑149 (MQ=17) gACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCg > 6:4663/1‑149 (MQ=38) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGAc > 6:275297/1‑60 (MQ=35) cccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCg > 5:277203/1‑139 (MQ=34) cccGAATCCGACCCCGGCTCAGACAACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCAAGCCAGACGGTCACCGAAGCCGGCGTAATCACCTAAAACTTGACCCTCAGCAATCCTGCCCACACCCCGCTAACCGTGa > 2:199958/1‑149 (MQ=14) ccGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGAc > 2:96342/1‑149 (MQ=39) tCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGt < 4:174333/149‑1 (MQ=38) | GCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTACAACAACGGTTCGACCGTCAGCGTC‑ACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGT > NC_002947/196944‑197237 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |