| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,478,840 | G→A | 5.1% | intergenic (+93/+352) | PP_2172 → / ← PP_2173 | hypothetical protein/AraC family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,478,840 | 0 | G | A | 5.1% | 540.8 / 9.8 | 174 | intergenic (+93/+352) | PP_2172/PP_2173 | hypothetical protein/AraC family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (77/88); new base A (6/3); total (83/91) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.50e-01 | |||||||||||
Only 100 of 181 total aligned reads displayed.
ATAATTCGAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAGGTAGACGG > NC_002947/2478692‑2478986 | aTTCGAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCTCACCCTGCG‑Agcgc > 6:80849/1‑149 (MQ=255) ttCGAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCt > 6:192398/1‑149 (MQ=255) gAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGa < 6:191197/148‑1 (MQ=255) aaaGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTTACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGc > 5:94062/1‑149 (MQ=255) gCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTc > 3:157561/1‑149 (MQ=255) gCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTc < 6:99751/149‑1 (MQ=255) cTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCg > 3:148138/1‑148 (MQ=255) cTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCg > 3:175320/1‑148 (MQ=255) ctcAACTCTGTCGGGTATTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTTCCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAgg < 8:100879/147‑1 (MQ=255) aGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCa < 1:139591/147‑1 (MQ=255) aGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAgg > 1:63825/1‑149 (MQ=255) aGCAACGCTGTCGGGGCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCa < 5:247996/147‑1 (MQ=255) gCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAggg > 5:297103/1‑149 (MQ=255) gCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AAAGCTCAGCGCTCGCAggg < 3:218680/149‑1 (MQ=255) gCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATACATGCAGTACCGGATTTAGAGTGCACGAGAGCTCCGCGTAGGACGTGCTAATTGAACGGGTTA‑CCCACCACACACTCGG‑AGCGATGAGCTTTAGCAggg > 2:282561/1‑149 (MQ=255) cAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGgt < 7:194668/149‑1 (MQ=255) tCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGtgttttgt < 1:257585/149‑1 (MQ=255) tCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGtgttttgtt > 8:78224/1‑149 (MQ=255) gggTCTTCTTCAAAAAATGCTCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTgttttgtttt < 7:341796/149‑1 (MQ=255) gggTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGtgttttgttt < 2:89252/148‑1 (MQ=255) gggTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTgttttgtttt > 1:279352/1‑149 (MQ=255) gggTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTgttttgtttt < 3:116739/149‑1 (MQ=255) ggTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGttttgttttg > 5:85969/1‑149 (MQ=255) ggTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGttttgttttg < 5:18949/149‑1 (MQ=255) ttcttcAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCa > 5:23473/1‑130 (MQ=255) ttcttcAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCa < 6:23473/130‑1 (MQ=255) tcttcAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGAc > 1:214865/1‑149 (MQ=255) cttcAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGAc < 3:58513/148‑1 (MQ=255) cAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGtgttttgttt > 3:275574/1‑138 (MQ=255) cAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGAcc < 8:220121/146‑1 (MQ=255) aaaaaaTGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACcatca < 5:108073/149‑1 (MQ=255) aaaaaaTGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACcatc < 3:319601/148‑1 (MQ=255) aaaaaaTGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACcatc < 1:177986/148‑1 (MQ=255) aaaaTGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCTTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCGTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCatcatc < 5:314394/149‑1 (MQ=255) tCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCGCAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcgagc < 1:89157/149‑1 (MQ=255) cGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGAcc > 2:345577/1‑135 (MQ=255) cGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGAcc < 1:345577/135‑1 (MQ=255) gatgatTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACcatc < 4:284098/137‑1 (MQ=255) atgatTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcgagcgag > 4:55698/1‑148 (MQ=255) atgatTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGt < 1:81077/149‑1 (MQ=255) atgatTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGt < 4:148138/149‑1 (MQ=255) aaCCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCatcatc < 6:115341/131‑1 (MQ=255) aCCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGt > 8:30907/1‑149 (MQ=255) aCCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGt < 2:63825/149‑1 (MQ=255) cATTCATGAAGTACCGGCTGTATGGTGCACGAGAGCTCCGCGTAGGCCGTGGTTATTGTACGGGTTA‑CCCCCCTCAGCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATGACGAGCGAGTCAGCACGTGGCg < 3:249896/149‑1 (MQ=255) cATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcgagc > 4:170348/1‑133 (MQ=255) cATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCa < 4:230153/139‑1 (MQ=255) aTCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGATA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCgg > 7:236526/1‑149 (MQ=255) cATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGgat < 6:85969/149‑1 (MQ=255) aTGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGga > 1:271850/1‑112 (MQ=255) aTGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGgatc > 2:232209/1‑149 (MQ=255) aTGCAGTACCGGCTGTAACCTGCACGAGAGCTCCCCGTAGGCCGTGCTAATTGAACGGGTTA‑ACCCCCACACCCAGCG‑AGCGCTCAGCTTTCGCAGGGTGTTTTGTTTTGGAGAACATCATCACGATCGAGTCATCACGTGGccgcgtc > 4:246374/1‑143 (MQ=255) aGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCT‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGgatcgatc < 1:357515/149‑1 (MQ=255) gCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCAtcatca > 6:311902/1‑112 (MQ=255) gCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTaa > 6:64311/1‑149 (MQ=255) cTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAAc < 7:307025/149‑1 (MQ=255) gCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGAtctc > 5:128679/1‑138 (MQ=255) tCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCg > 7:23040/1‑144 (MQ=255) tCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCg < 8:23040/144‑1 (MQ=255) cgcgTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGc < 3:55698/149‑1 (MQ=255) gCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTa > 7:155851/1‑149 (MQ=255) ccGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTAc < 4:262140/149‑1 (MQ=255) cGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCg > 1:318537/1‑102 (MQ=255) cGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACg > 2:316325/1‑149 (MQ=255) cGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACg > 1:42893/1‑149 (MQ=255) gTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGt < 7:30907/149‑1 (MQ=255) cTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTATCCACAGTTACCTCCGGCATGGCCAAGGTACGTTg < 1:232209/148‑1 (MQ=255) aaTTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTc > 1:127725/1‑149 (MQ=255) aTTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGt > 1:113215/1‑143 (MQ=255) aTTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGt < 2:113215/143‑1 (MQ=255) aTTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTc < 2:42893/148‑1 (MQ=255) ttGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTcc > 4:198581/1‑148 (MQ=255) tGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTcc > 3:245934/1‑147 (MQ=255) gAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAg > 8:278498/1‑149 (MQ=255) aaCGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGc < 3:198581/149‑1 (MQ=255) aaCGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTAGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGc > 4:19728/1‑149 (MQ=255) gTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGgtgt > 4:354669/1‑149 (MQ=255) ccccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGgat < 8:132334/86‑1 (MQ=255) ccccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGgat > 7:132334/1‑86 (MQ=255) ccccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTc < 8:155851/148‑1 (MQ=255) ccccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTc < 7:78224/148‑1 (MQ=255) ccccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTc < 5:75670/148‑1 (MQ=255) cccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAg < 2:163940/123‑1 (MQ=255) cccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAg > 1:163940/1‑123 (MQ=255) cccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCg > 8:252313/1‑148 (MQ=255) cccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGc < 3:211362/149‑1 (MQ=255) cccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGc > 4:75581/1‑147 (MQ=255) cccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCaa < 7:278498/149‑1 (MQ=255) cccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGAGGCATCGATCTCGGTAACCACACTTACCTCCGGCATGGCCAAGCTACGTTGGTCCAAGCCGTGTTTCGCaa > 6:267991/1‑149 (MQ=255) ccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTGCCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGc > 4:213842/1‑146 (MQ=255) aaacacCCTGCG‑AAAGCTCAGCGCTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGc > 2:210303/3‑146 (MQ=39) cacaCCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCaag > 3:9237/1‑148 (MQ=255) ccacCCTGCG‑AAAGCTCCGCGCTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCaagaa < 4:206945/148‑1 (MQ=255) acacCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCaagaa < 5:267991/149‑1 (MQ=255) acCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCgg < 2:350421/75‑1 (MQ=255) ccTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCAt > 5:110102/1‑107 (MQ=255) ccTGCG‑AAAGCTCAGCGCTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAgg > 2:16215/1‑147 (MQ=255) cTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCaagaa > 6:131127/1‑144 (MQ=255) g‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAGGTAGACgg < 2:277552/149‑1 (MQ=255) aGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAg > 2:267741/1‑123 (MQ=255) | ATAATTCGAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAGGTAGACGG > NC_002947/2478692‑2478986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |