| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,478,845 | G→C | 5.5% | intergenic (+98/+347) | PP_2172 → / ← PP_2173 | hypothetical protein/AraC family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,478,845 | 0 | G | C | 5.5% | 570.6 / 15.1 | 176 | intergenic (+98/+347) | PP_2172/PP_2173 | hypothetical protein/AraC family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (76/90); new base C (7/3); total (83/93) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.94e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 | |||||||||||
Only 100 of 176 total aligned reads displayed.
GAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAGGTAGACGGCACGA > NC_002947/2478699‑2478991 | gAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGa < 6:191197/148‑1 (MQ=255) aaaGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTTACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGc > 5:94062/1‑149 (MQ=255) gCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTc < 3:152647/149‑1 (MQ=255) gCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTc < 6:99751/149‑1 (MQ=255) cTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCg > 3:148138/1‑148 (MQ=255) ctcAACTCTGTCGGGTATTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTTCCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAgg < 8:100879/147‑1 (MQ=255) aGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCa < 1:139591/147‑1 (MQ=255) aGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAgg > 1:63825/1‑149 (MQ=255) gCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATACATGCAGTACCGGATTTAGAGTGCACGAGAGCTCCGCGTAGGACGTGCTAATTGAACGGGTTA‑CCCACCACACACTCGG‑AGCGATGAGCTTTAGCAggg > 2:282561/1‑149 (MQ=255) cAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGgt < 7:194668/149‑1 (MQ=255) gCTTTCGGGTCTTCTTCAAAAAATGCTCGATGATTTGACCGCATCCATGGAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGtgttt < 3:189631/149‑1 (MQ=255) tCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGtgttttgt < 1:257585/149‑1 (MQ=255) tCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGtgttttgtt > 7:245455/1‑149 (MQ=255) tCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGtgttttgtt > 8:78224/1‑149 (MQ=255) gggTCTTCTTCAAAAAATGCTCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTgttttgtttt < 7:341796/149‑1 (MQ=255) gggTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGtgttttgttt < 8:245455/148‑1 (MQ=255) gggTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTgttttgtttt > 1:279352/1‑149 (MQ=255) ggTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGttttgttttg < 5:18949/149‑1 (MQ=255) ttcttcAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCa > 5:23473/1‑130 (MQ=255) cttcAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGAc < 3:58513/148‑1 (MQ=255) cAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGtgttttgttt < 4:275574/138‑1 (MQ=255) cAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGAcc < 8:220121/146‑1 (MQ=255) aaaaaaTGATCGATGATTTGACCGCATCCATGGAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGtgtttt < 4:201598/133‑1 (MQ=255) aaaaaaTGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACcatc < 3:324847/148‑1 (MQ=255) aaaaaaTGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACcatc < 1:177986/148‑1 (MQ=255) tGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcga < 2:214865/149‑1 (MQ=255) tCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCGCAGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcgagc < 1:89157/149‑1 (MQ=255) tCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcgagcg < 3:290676/149‑1 (MQ=255) gatgatTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcgagcgag > 3:262140/1‑149 (MQ=255) atgatTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcgagcgag > 4:55698/1‑148 (MQ=255) atgatTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGt < 1:81077/149‑1 (MQ=255) atgatTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGt < 4:148138/149‑1 (MQ=255) gACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCAc < 4:37185/148‑1 (MQ=255) aaCCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCatcatc < 6:115341/131‑1 (MQ=255) aaCCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCatcatc > 5:115341/2‑132 (MQ=255) aCCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGt > 8:30907/1‑149 (MQ=255) cATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcgagc < 3:170348/133‑1 (MQ=255) cATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCAcgagc > 4:170348/1‑133 (MQ=255) cATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCa < 4:230153/139‑1 (MQ=255) cATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCa > 3:230153/1‑139 (MQ=255) aTCCCTGCAGTACCGGCTGTAGCGTGCACGAGAGCGCCGCGTAGGCCGTGCTAATTGAACGGGGTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCgg < 2:293862/149‑1 (MQ=255) cATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGgat < 6:85969/149‑1 (MQ=255) aTGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGga > 1:271850/1‑112 (MQ=255) aTGCAGTACCGGCTGTAACCTGCACGAGAGCTCCCCGTAGGCCGTGCTAATTGAACGGGTTA‑ACCCCCACACCCAGCG‑AGCGCTCAGCTTTCGCAGGGTGTTTTGTTTTGGAGAACATCATCACGATCGAGTCATCACGTGGccgcgtc > 4:246374/1‑143 (MQ=255) tGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGgatcg < 2:96612/149‑1 (MQ=255) aGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTACCCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGgatcga > 2:75163/1‑148 (MQ=255) aGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCT‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGgatcgatc < 1:357515/149‑1 (MQ=255) gTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGAtct < 2:17413/149‑1 (MQ=255) gCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCAtcatca > 6:311902/1‑112 (MQ=255) gCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTaa > 6:64311/1‑149 (MQ=255) gCTGCAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCAtcatca < 5:311902/112‑1 (MQ=255) cTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAAc < 7:307025/149‑1 (MQ=255) gCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGAtctc > 5:128679/1‑138 (MQ=255) aCGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCt > 6:191462/1‑149 (MQ=255) gagCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCgg < 7:165017/149‑1 (MQ=255) tCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCg > 7:23040/1‑144 (MQ=255) ccGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTAc < 4:262140/149‑1 (MQ=255) cGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCg > 1:318537/1‑102 (MQ=255) cGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCg < 2:318537/102‑1 (MQ=255) cGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACg > 1:42893/1‑149 (MQ=255) gTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGt < 7:30907/149‑1 (MQ=255) tGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGtt < 7:94647/149‑1 (MQ=255) cTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTATCCACAGTTACCTCCGGCATGGCCAAGGTACGTTg < 1:232209/148‑1 (MQ=255) tAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGt > 4:299342/1‑149 (MQ=255) tAATTGAACGGGTTA‑CCCCCAACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCCAGTCAGCACGTGGCGGGATCGATCTCGGTAACCAGAGTTACCTCCGGCATGGCCAAGGTACGTTGGt > 7:293023/1‑149 (MQ=255) aaTTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTc > 1:127725/1‑149 (MQ=255) aaTTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTc > 2:57769/1‑149 (MQ=255) aTTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGt < 2:113215/143‑1 (MQ=255) aTTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGt > 1:113215/1‑143 (MQ=255) aTTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTc < 2:42893/148‑1 (MQ=255) gAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAg > 8:278498/1‑149 (MQ=255) aaCGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTAGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGc > 4:19728/1‑149 (MQ=255) aCGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCg > 5:329524/1‑149 (MQ=255) cGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGTCCATCATCACGAGCGAGTCAGCACGTGGCGGGGTCGATCTCGGTAACCACAGTTACGTCCGGCATGGCCAAGGTACGTTGGTCCAAGCg < 3:246374/148‑1 (MQ=255) aaacaaaacacCCTGCG‑AAAGCTCAGCGCTCGCAGGGTGTGTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTc > 3:206945/8‑149 (MQ=38) ccccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGgat > 7:132334/1‑86 (MQ=255) ccccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTc < 5:80849/148‑1 (MQ=255) ccccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTc < 5:75670/148‑1 (MQ=255) ccccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTc < 8:155851/148‑1 (MQ=255) cccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAg > 1:163940/1‑123 (MQ=255) cccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAg < 2:163940/123‑1 (MQ=255) cccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCg > 1:188042/1‑148 (MQ=255) cccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCg > 8:252313/1‑148 (MQ=255) cccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGc < 3:211362/149‑1 (MQ=255) cccccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGc < 3:75463/149‑1 (MQ=255) cccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGc > 4:75581/1‑147 (MQ=255) cccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGc > 5:292973/1‑147 (MQ=255) cccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGAGGCATCGATCTCGGTAACCACACTTACCTCCGGCATGGCCAAGCTACGTTGGTCCAAGCCGTGTTTCGCaa > 6:267991/1‑149 (MQ=255) ccACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTGCCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGc > 4:213842/1‑146 (MQ=255) ccacCCTGCG‑AAAGCTCCGCGCTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCaagaa < 4:206945/148‑1 (MQ=255) acacCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCaagaa < 5:267991/149‑1 (MQ=255) acCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCgg > 1:350421/1‑75 (MQ=255) acCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCgg < 2:350421/75‑1 (MQ=255) ccTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAgg > 5:109663/1‑147 (MQ=255) ccTGCG‑AAAGCTCAGCGCTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAgg > 2:16215/1‑147 (MQ=255) cTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCaagaa > 6:131127/1‑144 (MQ=255) g‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAGGTAGACgg < 2:277552/149‑1 (MQ=255) aGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAg > 2:267741/1‑123 (MQ=255) cgcTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAGGTa > 3:274522/1‑141 (MQ=255) cTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACATACGGCATGGACAAGGTACGTTGGTACAAGCGGTGTTTCGCAAGAAGGTAGACGGCACGa > 1:27698/1‑149 (MQ=255) | GAAAGGCCTCAGCAACGCTGTCGGGTCTTCTTCAAAAAATGATCGATGATTTGACCGCATCCATGCAGTACCGGCTGTAGCGTGCACGAGAGCTCCGCGTAGGCCGTGCTAATTGAACGGGTTA‑CCCCCCACACCCTGCG‑AGCGCTGAGCTTTCGCAGGGTGTTTTGTTTTGGAGACCATCATCACGAGCGAGTCAGCACGTGGCGGGATCGATCTCGGTAACCACAGTTACCTCCGGCATGGCCAAGGTACGTTGGTCCAAGCGGTGTTTCGCAAGAAGGTAGACGGCACGA > NC_002947/2478699‑2478991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |