| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,762,978 | G→C | 7.3% | G311G (GGC→GGG) ‡ | PP_2417 ← | iron ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,762,978 | 0 | G | C | 7.3% | 174.0 / 3.9 | 55 | G311G (GGC→GGG) ‡ | PP_2417 | iron ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base G (23/27); new base C (2/2); total (26/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.59e-01 | |||||||||||
AGTTGCAGCCCCAGCCCATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGAGCAGAAGGCGCAAGGCATGGGGGATAACCAGCCCGACAAAACCGATGGCGC > NC_002947/2762833‑2763126 | aGTTGCAGCCCCAGCCCATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCg > 1:268138/1‑149 (MQ=255) gTTGCAGCCCCAGCCCATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCgg < 1:40009/149‑1 (MQ=255) gTTGCAGCCCCAGCCCATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCgg > 2:40009/1‑149 (MQ=255) gCAGCCCCAGCCCATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGa > 8:220984/1‑149 (MQ=255) gCAGCCCCAGCCCATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGa > 8:14156/1‑149 (MQ=255) gccccagcccATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCa < 3:341564/149‑1 (MQ=255) gccccagcccATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCGGCCAGGTGATcc < 5:187549/149‑2 (MQ=255) gccccagcccATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCGGCCAGGTGATcc < 3:274581/149‑2 (MQ=255) gccccagcccATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCACCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCa < 8:10983/149‑1 (MQ=255) cccagcccATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGc > 1:208399/1‑149 (MQ=255) cccagcccATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGc > 7:8223/1‑149 (MQ=255) ccagcccATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCg > 3:292345/1‑149 (MQ=255) gCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGaaa < 4:18416/148‑1 (MQ=255) cGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGc < 7:220984/149‑1 (MQ=255) ggATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACaa < 7:289868/149‑1 (MQ=255) tGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGTCCGGTGATCAGCGTGCGCGAAAGAATGTATGCCACCAt > 8:238485/1‑147 (MQ=255) tGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCa < 4:127716/149‑1 (MQ=255) tGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCa < 2:208399/149‑1 (MQ=255) gccTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAg < 6:291481/147‑1 (MQ=255) cATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCAcc > 3:228764/1‑149 (MQ=255) tGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGc > 4:351623/1‑149 (MQ=255) cGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCa < 2:268138/149‑1 (MQ=255) ggTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAg > 2:248337/1‑149 (MQ=255) ggTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAg > 5:308215/1‑149 (MQ=255) gcgcCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACTGGGCGGTGCGCTgt < 7:14156/149‑2 (MQ=255) ccccGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCggg > 2:251820/1‑149 (MQ=255) ccGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCg < 7:61154/145‑1 (MQ=255) ccGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCg > 8:61154/1‑145 (MQ=255) ccGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGc > 4:283531/1‑148 (MQ=255) gACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCATTGCGCTGGCg < 2:97455/143‑1 (MQ=255) gACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCg > 1:97455/1‑143 (MQ=255) gACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCaa > 5:117047/1‑148 (MQ=255) gACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAAc < 4:292345/149‑1 (MQ=255) cAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCtg‑t > 7:188946/1‑149 (MQ=255) aGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGGCAACAGCGCACCGCCCAGTGCGCTGGCGGGC‑ACAGCCGTCtg‑tt < 1:251820/149‑2 (MQ=255) aTCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGC‑ACAGCCGTCtg‑ttgccc < 7:279648/149‑6 (MQ=255) aGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGC‑ACAGCCGTCTGTTGCCCgc < 4:146539/148‑2 (MQ=255) gAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGcc > 8:253737/1‑147 (MQ=255) gAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGa < 8:8223/149‑1 (MQ=255) cGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGAGCAg < 7:253737/148‑1 (MQ=255) gggggCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGAGCAg > 6:319502/1‑147 (MQ=255) gggCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCgg < 6:281129/114‑1 (MQ=255) gggCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCgg > 5:281129/1‑114 (MQ=255) cACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCt > 6:67791/1‑124 (MQ=255) cACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCt < 5:67791/124‑1 (MQ=255) ccGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGAGCAGAAGGCGCaa < 3:283531/149‑1 (MQ=255) cGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGAGCAGAAGGCGCAAg > 5:237046/1‑149 (MQ=255) gcCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGAGCAGAAGGCGCAAGGCATgggg < 6:117047/149‑1 (MQ=255) aCCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGAGCAGAAGGCGCAAGGCATGGGGGATAAc < 4:228764/149‑1 (MQ=255) aCCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGAGCAGAAGGCGCAAGGCATGGGGGATAAc < 1:248337/149‑1 (MQ=255) aCGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCgg > 6:88549/1‑91 (MQ=255) aCGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCgg < 5:88549/91‑1 (MQ=255) gctgATCACCGGCCAGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGAGCAGAAGGCGCAAGGCATGGGGGATAACCAGCCCGACa > 2:341162/4‑148 (MQ=255) tgATCACCGGCCAGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTA‑TGCCCGGGGCCGAGCAGAAGGCGCAAGGCATGGGGGATAACCAGCCCGACaaaa > 1:285991/2‑149 (MQ=255) ccTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGAGCAGAAGGCGCAAGGCATGGGGGATAACCAGCCCGACAAAACCGATg < 6:237046/149‑1 (MQ=255) gCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGAGCAGAAGGCGCAAGGCATGGGGGATAACCAGCCCGACAAAACCGATGgcgc < 6:308215/149‑1 (MQ=255) | AGTTGCAGCCCCAGCCCATGGCAGGCCAGCGGAGGGATGCGAACAGCTGCCATGGCGGTCATGGGCGCCCCCGACGGCTGACCAGAATCAGTGCGAATACGGGGGCACCGATCAGCGCCGTAACCACGCCCACCGGGATCACCTGGCCGGTGATCAGCGTGCGCGAAAGAATGTCTGCCACAATCAGG‑AACAGCGCACCGCCCAGTGCGCTGGCGGGCAACAGACGGCTG‑TGCCCGGGGCCGAGCAGAAGGCGCAAGGCATGGGGGATAACCAGCCCGACAAAACCGATGGCGC > NC_002947/2762833‑2763126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |