Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 2,791,721 | G→A | 6.5% | S273L (TCG→TTG) | PP_2444 ← | LysR family transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 2,791,721 | 0 | G | A | 6.5% | 181.2 / 2.2 | 61 | S273L (TCG→TTG) | PP_2444 | LysR family transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base G (30/27); new base A (2/2); total (32/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.94e-01 |
GACTTTACCATAGAGCACCTATAGCGCATGTCGGGCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCTTGCATCAAGGCACTGTCAT > NC_002947/2791580‑2791868 | gACTTTACCATAGAGCACCTATAGCGCATGTCGGGCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGc < 4:158892/149‑1 (MQ=255) tACCATAGAGCACCTATAGCGCATGTCGGGCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATa < 2:207133/147‑1 (MQ=255) tAGAGCACCTATAGCGCATGTCGGGCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGAt < 3:190588/149‑1 (MQ=255) gagCACCTATAGCGCATGTCGGGCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTc > 8:48986/1‑149 (MQ=255) cTATAGCGCATGTCGGGCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCAc > 3:150129/1‑149 (MQ=255) cTATAGCGCATGTCGGGCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCAAAATGGCATAGAACGATTCGTGCAc > 3:36787/1‑149 (MQ=255) cTATAGCGCATGTCGGGCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCAAAATGGCATAGAACGATTAGTGCAc > 3:32167/1‑149 (MQ=255) gcATGTCGGGCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCg > 4:307156/1‑149 (MQ=255) gggCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGATCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGcc < 1:93073/149‑1 (MQ=255) gCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCg > 1:69717/1‑140 (MQ=255) gCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCg < 2:69717/140‑1 (MQ=255) cGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCACTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGCCAAAGAACGATTAGTGCACGGCCTCGGTCTGCCCGAt > 7:29891/1‑149 (MQ=255) gtgtTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGAt > 6:157798/1‑148 (MQ=255) tttGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTg > 3:350908/1‑148 (MQ=255) aaTCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCAt < 8:76623/102‑1 (MQ=255) aaTCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCAt > 7:76623/1‑102 (MQ=255) aTCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCg > 2:364480/1‑112 (MQ=255) aTCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCg < 1:364480/112‑1 (MQ=255) aGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATAc < 3:307156/148‑1 (MQ=255) ttACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACgg < 5:157798/148‑1 (MQ=255) ggCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCacac < 4:150129/149‑1 (MQ=255) cTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACAcct > 2:41588/1‑149 (MQ=255) tGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGAt > 3:317461/1‑113 (MQ=255) tGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGAt < 4:317461/113‑1 (MQ=255) tGAAACAACTCCCGCCGCGCCCCCTCCGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGc < 6:14339/149‑1 (MQ=255) aaaCAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGa > 3:324546/1‑149 (MQ=255) aacaacTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACgg < 8:166537/132‑1 (MQ=255) aacaacTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACgg > 7:166537/1‑132 (MQ=255) aacTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTAc > 7:290950/1‑149 (MQ=255) aacTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTAc > 5:236880/1‑149 (MQ=255) tCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCt > 3:84023/1‑149 (MQ=255) tCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCt > 5:80609/1‑149 (MQ=255) ccgccgCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTgg < 4:84023/149‑1 (MQ=255) ccgccgCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTgg > 2:84273/1‑149 (MQ=255) ccgccgCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTg < 1:41588/148‑1 (MQ=255) gcCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCAAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTAc < 4:32167/149‑1 (MQ=255) gcCCCCTCGGTAATCGCCACGATCCCTGGGTGCGTGACCTTGCGCTCCACCAAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTAc < 4:36787/149‑1 (MQ=255) cTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGaaaa > 4:2792/1‑149 (MQ=255) ggTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAAt < 6:80609/147‑1 (MQ=255) ggTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGc < 4:350908/149‑1 (MQ=255) gCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGc < 4:324546/148‑1 (MQ=255) aCGATGCCTGGGTGATTGACCTTGCGCTCCAGCGAAATGGCATAGAACGATTCGTGGACGGGCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGTCGCTACGAAAATGCCGCTGCCCGa < 8:29891/149‑1 (MQ=255) aTCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCAc < 7:89304/83‑1 (MQ=255) aTCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCAc > 8:89304/1‑83 (MQ=255) cTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACt < 7:213277/87‑1 (MQ=255) cTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACt > 8:213277/1‑87 (MQ=255) tGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGa > 1:124877/1‑141 (MQ=255) tGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGa < 2:124877/141‑1 (MQ=255) tGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACt < 6:36922/143‑1 (MQ=255) tGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACt > 5:36922/1‑143 (MQ=255) cTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGTTTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCtt < 1:84273/149‑1 (MQ=255) cTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCtt < 6:236880/149‑1 (MQ=255) gACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCTTGCa > 5:58411/1‑149 (MQ=255) ccTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCTTGCAt > 8:135959/1‑148 (MQ=255) ccTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCTTGCATc < 7:135959/149‑1 (MQ=255) tCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCTTGCATCAAGGCACt > 3:166335/1‑149 (MQ=255) tCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCTTGCATCAAGGCACt > 7:78490/1‑149 (MQ=255) cACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCTTGCATCAAGGCACTGt > 6:162096/1‑149 (MQ=255) aCCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCTTGCATCAAGGCACTGt > 1:248343/1‑148 (MQ=255) aCCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCTTGCATCAAGGCACTGTc < 6:58411/149‑1 (MQ=255) cGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCTTGCATCAAGGCACTGTCAt > 7:237703/1‑149 (MQ=255) | GACTTTACCATAGAGCACCTATAGCGCATGTCGGGCCGTGTTCTTTGTCAATCAGGCTTTTACGGCTACCAGTGAAACAACTCCCGCCGCGCCCCCTCGGTAATCGCCACGATCCCTGGGTGCTTGACCTTGCGCTCCACCGAAATGGCATAGAACGATTCGTGCACGGCCTCGGTCTGCCCGATCAGTTGCACGCCATACTGACGGCACACCTCCTCGGCGATTACGCTGGGCGCTACGAAAATGCCGCTGCCCGACTGTCCGAACGCTTGCATCAAGGCACTGTCAT > NC_002947/2791580‑2791868 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |