| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 2,853,344 | A→G | 78.8% | intergenic (‑13/‑305) | PP_2505 ← / → PP_2506 | GAF domain/GGDEF domain‑containing protein/membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 2,853,344 | 0 | A | G | 78.8% | 61.0 / 11.1 | 33 | intergenic (‑13/‑305) | PP_2505/PP_2506 | GAF domain/GGDEF domain‑containing protein/membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (4/3); new base G (12/14); total (16/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CACCTGGGCTAGTTCTTGGGTGAGTCGTACCAAGGTATCAAGATAATGCTCGGCCGGCGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCACTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAGCAAACCGGTTGGCTCTATCCCGGATCCTCCAG > NC_002947/2853200‑2853486 | cACCTGGGCTAGTTCTTGGGTGAGTCGTACCAAGGTATCAAGATAATGCTCGGCCGGCGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGTACAAGCTGGCATGTCTGTTactccactcc > 7:125298/1‑149 (MQ=255) tAGTTCTTGGGTGAGTCGTACCAAGGTATCAAGATAATGCTCGGCCGGCGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCtt > 1:23819/1‑149 (MQ=255) gTTCTTGGGTGAGTCGTACCAAGGTATCAAGATAATGCTCGGCCGGCGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCttt < 6:171853/148‑1 (MQ=255) ttCTTGGGTGAGTCGTACCAAGGTATCAAGATAATGCGCGGCCGGCGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCttttt < 8:91819/149‑1 (MQ=255) gTACCAAGGTATCAAGATAATGCTCGGCCGGCGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGGTCTTTTTTTCACAAATGCGGa < 5:133536/149‑1 (MQ=255) aGATAATGCTCGGCCGGCGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCaa < 4:68744/149‑1 (MQ=255) tAATGCTCGGCCGGCGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCa > 8:123698/1‑149 (MQ=255) cTCGGCCGGCGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGATTCATCAGCGGGTAGGGGACAAGCAGGCATGTCTGTTACTCCACTACTTTGTTCTTTTTTTGACAAATGCGGATAGAAAATTCTAAAGCATCtt > 7:151857/1‑148 (MQ=255) cggccggaGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCaa < 5:142177/139‑1 (MQ=255) cggccggaGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCaa > 6:142177/1‑139 (MQ=255) gcGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGc < 1:71400/149‑1 (MQ=255) gcGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGc < 3:130810/149‑1 (MQ=255) aGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCg > 8:216297/1‑149 (MQ=255) tCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCACTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGgc > 5:176329/1‑149 (MQ=255) atatCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGcc < 4:179161/149‑1 (MQ=255) atatCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCACTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGcc > 3:192968/1‑149 (MQ=255) atcaAGTGTGCGCTGACGAAGTCCTTCATCACCGGGTACCGGACAAGCTGCCATGTCAGTTACTCCGCTCCTTGGATCTATTTTTCACAAAAGCGGATAGAAAATTCTCAAGCAACTTGACCAATGCCGCACAACCTCGCCCCCTTcat > 5:307966/1‑148 (MQ=255) tcaAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTcagg > 4:128491/1‑149 (MQ=255) aaGTTCTTCATCAGCTGGTAGGGGAGAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCTCACGCTCGGCGCCTTCAGGCCAGGCCAGCCTGAATa < 8:151857/149‑1 (MQ=255) tggttgatcaGCGGGTAGGTGTGAATCTGGCTTGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGAGCAATGCCGCACACGCTCGGCGCGTTCAGGCCAGGCCAGCCGGAATAggg < 6:307966/143‑1 (MQ=255) cTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCAAGCCGGAATAgg > 6:58215/1‑146 (MQ=255) cTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCACTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAg > 4:199105/1‑149 (MQ=255) tcaGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAg > 1:226489/1‑149 (MQ=255) ggTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAGCAAAcc > 7:289690/1‑149 (MQ=255) ggTAGGGGACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAGCAAAcc > 8:138451/1‑149 (MQ=255) ggggACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAGCAAACCGGtt < 7:138451/149‑1 (MQ=255) ggACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAGCAAACCGGTTgg < 7:123698/149‑1 (MQ=255) gACAAGCTGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAGCAAACCGGTTGGc > 7:189250/1‑149 (MQ=255) gACAAGCTGGCATGTCTGTTACTCCACTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAGCAAACCGGTTGGc < 6:176329/149‑1 (MQ=255) tGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGa > 7:104971/1‑123 (MQ=255) tGGCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGa < 8:104971/123‑1 (MQ=255) gCATGTCTGTTACTCCGCTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAGCAAAc < 8:66028/132‑1 (MQ=255) gCATGTCTGTTACTCCACTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAGCAAACCGGTTGGCTCTATccc < 3:199105/148‑1 (MQ=255) tGTCTGTTACTACACTCCATGGTTCTTTTTTTCACAAATGCTGATAGAAAATTCTCAAGCATCTTGACCATTGCCGCACACGCTCTGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAGCAAACGGGTTGGCTCTATCCCGGa < 8:125298/148‑1 (MQ=255) actccgctccTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAGCAAACCGGTTGGCTCTATCCCGGATCCTCCAg < 8:289690/148‑1 (MQ=255) | CACCTGGGCTAGTTCTTGGGTGAGTCGTACCAAGGTATCAAGATAATGCTCGGCCGGCGTATCGACCAAGTCCATATCATCAAGTGTGCGCTGACGAAGTGCTTCATCAGCGGGTAGGGGACAAGCTGGCATGTCTGTTACTCCACTCCTTGGTTCTTTTTTTCACAAATGCGGATAGAAAATTCTCAAGCATCTTGACCAATGCCGCACACGCTCGGCGCCTTCAGGCCAGGCCAGCCGGAATAGGGAGCATAGCAAACCGGTTGGCTCTATCCCGGATCCTCCAG > NC_002947/2853200‑2853486 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |