Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,905,462 G→A 9.2% A116V (GCC→GTC)  PP_2557 ← sensory box protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,905,4620GA 9.2% 151.6 / 3.8 54A116V (GCC→GTC) PP_2557sensory box protein
Reads supporting (aligned to +/- strand):  ref base G (22/27);  new base A (2/3);  total (24/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01

GGAACAGCAAGGCCAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCACCCGCAT  >  NC_002947/2905316‑2905604
                                                                                                                                                   |                                                                                                                                              
ggAACAGCAAGGCCAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCg                                                                                                                                              <  3:204397/149‑1 (MQ=255)
     aGCAAGGCCAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAAc                                                                                                                                         >  6:257684/1‑149 (MQ=255)
          ggCCAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTATTCGGCCTTGCGCGGGACGTTACCGccca                                                                                                                                    <  4:227004/149‑2 (MQ=255)
           gCCAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCGTGGCGCGGGACGTTACCGcccag                                                                                                                                   >  5:300120/1‑147 (MQ=255)
            ccAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCcgc                                                                                                                                  >  3:65197/1‑149 (MQ=255)
            ccAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCcgc                                                                                                                                  <  4:65197/149‑1 (MQ=255)
                 cTGCGGTTGTGACGCCGGGCCGCTGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCAc                                                                                                                             <  4:211531/149‑1 (MQ=255)
                 cTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCAc                                                                                                                             >  5:218493/1‑149 (MQ=255)
                    cGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGc                                                                                                                           <  3:150476/148‑1 (MQ=255)
                          tgACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCGTGGCGCGGGACGTTACCGCCCAGCGCAAGGCCGaaga                                                                                                                     <  6:300120/148‑4 (MQ=37)
                              gCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCt                                                                                                                >  6:64333/1‑149 (MQ=255)
                                 gggCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTgg                                                                                                             >  3:310032/1‑149 (MQ=255)
                                   gCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGc                                                                                                           <  6:218493/149‑1 (MQ=255)
                                   gCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGc                                                                                                           <  7:203808/149‑1 (MQ=255)
                                            aGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGa                                                                                                  <  5:64333/149‑1 (MQ=255)
                                             gggCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGAc                                                                                                 <  3:8780/149‑1 (MQ=255)
                                             gggCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGAc                                                                                                 <  4:310032/149‑1 (MQ=255)
                                              ggCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGAc                                                                                                 >  7:86365/1‑148 (MQ=255)
                                                     tCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAgg                                                                                          >  8:184162/1‑148 (MQ=255)
                                                     tCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAgg                                                                                          <  7:184162/148‑1 (MQ=255)
                                                      ccAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCtt                                                                                                               <  3:223713/126‑1 (MQ=255)
                                                      ccAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCtt                                                                                                               >  4:223713/1‑126 (MQ=255)
                                                      ccAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTgg                                                                                                             <  5:115394/128‑1 (MQ=255)
                                                      ccAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTgg                                                                                                             >  6:115394/1‑128 (MQ=255)
                                                        aGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTTCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGgccgc                                                                                      <  1:83703/149‑1 (MQ=255)
                                                        aGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGgccgc                                                                                      >  7:199673/1‑149 (MQ=255)
                                                                    aaCATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAAtgt                                                                           <  1:137617/148‑1 (MQ=255)
                                                                            gcgGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGGCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGc                                                                  >  5:314885/1‑149 (MQ=255)
                                                                                    ccAGCCGGGTCAGCGGTTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATcc                                                          <  8:234920/149‑1 (MQ=255)
                                                                                    ccAGCCGGGTCAGCGGGTCATGATGGGCGAGGGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATc                                                           >  1:32241/1‑149 (MQ=255)
                                                                                     cAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCt                                                         >  8:172060/1‑149 (MQ=255)
                                                                                       gCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGAc                                                                                                 <  2:81175/107‑1 (MQ=255)
                                                                                       gCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGAc                                                                                                 >  1:81175/1‑107 (MQ=255)
                                                                                       gCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTg                                                       >  2:43815/1‑149 (MQ=255)
                                                                                       gCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTg                                                       <  8:199673/149‑1 (MQ=255)
                                                                                                 cGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGccc                                                                                    <  2:206079/110‑1 (MQ=255)
                                                                                                 cGGGTCATGATGGGCGA‑GGAAGCGCAGTACGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGccc                                                                                    >  1:206079/1‑110 (MQ=255)
                                                                                                   ggTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACgg                                           <  2:32241/149‑1 (MQ=255)
                                                                                                           tgGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCaaaa                                   <  8:86365/149‑1 (MQ=255)
                                                                                                            gggCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAg                                  >  8:113186/1‑149 (MQ=255)
                                                                                                             ggCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGt                                 <  1:54624/149‑1 (MQ=255)
                                                                                                              gCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAggc                                <  5:257684/149‑3 (MQ=255)
                                                                                                                gA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGt                              <  1:43815/149‑1 (MQ=255)
                                                                                                                   ggAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAg                            >  5:224518/1‑149 (MQ=255)
                                                                                                                    gAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGt                           >  8:285046/1‑149 (MQ=255)
                                                                                                                        cgcAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCgg                       <  2:96250/149‑1 (MQ=255)
                                                                                                                                gTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCg                <  6:314885/148‑1 (MQ=255)
                                                                                                                                  cTTCGGCCTTGCGCTCGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGtt              >  2:52528/1‑148 (MQ=255)
                                                                                                                                      ggcgtggcgcGGGACGTTACCGCCCAGCGCAAGGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTtcatca         >  4:47357/7‑149 (MQ=38)
                                                                                                                                       gCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCAc        >  5:359492/1‑149 (MQ=255)
                                                                                                                                         cTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCAccc      <  7:285046/149‑1 (MQ=255)
                                                                                                                                            gcgcTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCACCCGCa   >  1:280213/1‑149 (MQ=255)
                                                                                                                                             cgcgGGACGTTACCGCCCAGCGCAAGGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCACCCGCAt  <  3:47357/149‑1 (MQ=255)
                                                                                                                                             cgcTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCACCCGCa   <  6:359492/148‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                              
GGAACAGCAAGGCCAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCACCCGCAT  >  NC_002947/2905316‑2905604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑