Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,905,468 A→C 9.1% V114G (GTT→GGT)  PP_2557 ← sensory box protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,905,4680AC 9.1% 162.8 / 5.6 55V114G (GTT→GGT) PP_2557sensory box protein
Reads supporting (aligned to +/- strand):  ref base A (22/28);  new base C (2/3);  total (24/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.68e-01

AGCAAGGCCAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCACCCGCATGATCGAG  >  NC_002947/2905321‑2905611
                                                                                                                                                    |                                                                                                                                               
aGCAAGGCCAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAAc                                                                                                                                                >  6:257684/1‑149 (MQ=255)
     ggCCAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTATTCGGCCTTGCGCGGGACGTTACCGccca                                                                                                                                           <  4:227004/149‑2 (MQ=255)
      gCCAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCGTGGCGCGGGACGTTACCGcccag                                                                                                                                          >  5:300120/1‑147 (MQ=255)
       ccAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCcgc                                                                                                                                         >  3:65197/1‑149 (MQ=255)
       ccAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCcgc                                                                                                                                         <  4:65197/149‑1 (MQ=255)
            cTGCGGTTGTGACGCCGGGCCGCTGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCAc                                                                                                                                    <  4:211531/149‑1 (MQ=255)
            cTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCAc                                                                                                                                    >  5:218493/1‑149 (MQ=255)
               cGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGc                                                                                                                                  <  3:150476/148‑1 (MQ=255)
                     tgACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCGTGGCGCGGGACGTTACCGCCCAGCGCAAGGCCGaaga                                                                                                                            <  6:300120/148‑4 (MQ=37)
                         gCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCt                                                                                                                       >  6:64333/1‑149 (MQ=255)
                            gggCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTgg                                                                                                                    >  3:310032/1‑149 (MQ=255)
                              gCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGc                                                                                                                  <  6:218493/149‑1 (MQ=255)
                              gCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGc                                                                                                                  <  7:203808/149‑1 (MQ=255)
                                       aGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGa                                                                                                         <  5:64333/149‑1 (MQ=255)
                                        gggCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGAc                                                                                                        <  4:310032/149‑1 (MQ=255)
                                        gggCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGAc                                                                                                        <  3:8780/149‑1 (MQ=255)
                                         ggCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGAc                                                                                                        >  7:86365/1‑148 (MQ=255)
                                                tCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAgg                                                                                                 <  7:184162/148‑1 (MQ=255)
                                                tCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAgg                                                                                                 >  8:184162/1‑148 (MQ=255)
                                                 ccAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCtt                                                                                                                      <  3:223713/126‑1 (MQ=255)
                                                 ccAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCtt                                                                                                                      >  4:223713/1‑126 (MQ=255)
                                                 ccAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTgg                                                                                                                    <  5:115394/128‑1 (MQ=255)
                                                 ccAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTgg                                                                                                                    >  6:115394/1‑128 (MQ=255)
                                                   aGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTTCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGgccgc                                                                                             <  1:83703/149‑1 (MQ=255)
                                                   aGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGgccgc                                                                                             >  7:199673/1‑149 (MQ=255)
                                                               aaCATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAAtgt                                                                                  <  1:137617/148‑1 (MQ=255)
                                                                       gcgGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGGCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGc                                                                         >  5:314885/1‑149 (MQ=255)
                                                                               ccAGCCGGGTCAGCGGTTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATcc                                                                 <  8:234920/149‑1 (MQ=255)
                                                                               ccAGCCGGGTCAGCGGGTCATGATGGGCGAGGGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATc                                                                  >  1:32241/1‑149 (MQ=255)
                                                                                cAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCt                                                                >  8:172060/1‑149 (MQ=255)
                                                                                  gCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGAc                                                                                                        <  2:81175/107‑1 (MQ=255)
                                                                                  gCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGAc                                                                                                        >  1:81175/1‑107 (MQ=255)
                                                                                  gCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTg                                                              >  2:43815/1‑149 (MQ=255)
                                                                                  gCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTg                                                              <  8:199673/149‑1 (MQ=255)
                                                                                            cGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGccc                                                                                           <  2:206079/110‑1 (MQ=255)
                                                                                            cGGGTCATGATGGGCGA‑GGAAGCGCAGTACGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGccc                                                                                           >  1:206079/1‑110 (MQ=255)
                                                                                              ggTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACgg                                                  <  2:32241/149‑1 (MQ=255)
                                                                                                      tgGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCaaaa                                          <  8:86365/149‑1 (MQ=255)
                                                                                                       gggCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAg                                         >  8:113186/1‑149 (MQ=255)
                                                                                                        ggCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGt                                        <  1:54624/149‑1 (MQ=255)
                                                                                                         gCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAggc                                       <  5:257684/149‑3 (MQ=255)
                                                                                                           gA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGt                                     <  1:43815/149‑1 (MQ=255)
                                                                                                              ggAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAg                                   >  5:224518/1‑149 (MQ=255)
                                                                                                               gAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGt                                  >  8:285046/1‑149 (MQ=255)
                                                                                                                   cgcAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCgg                              <  2:96250/149‑1 (MQ=255)
                                                                                                                           gTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCg                       <  6:314885/148‑1 (MQ=255)
                                                                                                                             cTTCGGCCTTGCGCTCGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGtt                     >  2:52528/1‑148 (MQ=255)
                                                                                                                                 ggcgtggcgcGGGACGTTACCGCCCAGCGCAAGGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTtcatca                >  4:47357/7‑149 (MQ=38)
                                                                                                                                  gCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCAc               >  5:359492/1‑149 (MQ=255)
                                                                                                                                    cTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCAccc             <  7:285046/149‑1 (MQ=255)
                                                                                                                                       gcgcTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCACCCGCa          >  1:280213/1‑149 (MQ=255)
                                                                                                                                        cgcgGGACGTTACCGCCCAGCGCAAGGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCACCCGCAt         <  3:47357/149‑1 (MQ=255)
                                                                                                                                        cgcTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCACCCGCa          <  6:359492/148‑1 (MQ=255)
                                                                                                                                               cGGTAACGTCCCGCGCCACGCTGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCg                                                            <  6:3619/91‑1 (MQ=255)
                                                                                                                                               cGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCACCCGCATGATCGAg  <  1:52528/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                               
AGCAAGGCCAGCCTGCGGTTGTGACGCCGGGCCGCGGCCAGGGCAGTGTCCAGCCGTTCATTGAACATGGCGCGGTTGGCCAGCCGGGTCAGCGGGTCATGATGGGCGA‑GGAAGCGCAGTTCGTCTTCGGCCTTGCGCTGGGCGGTAACGTCCCGCGCCACGCCGATACGCGCTTGGGCCTCCTCGGACCAGCAGGCCGCCCACAGAATGTGCACCACGCTGCCATCCTTGCGAAGGTAACGGTTGCAAAAGTCGTAGTGCGGCTGGCCGTTCATCACCCGCATGATCGAG  >  NC_002947/2905321‑2905611

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑