Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,087,769 | C→G | 7.1% | R259P (CGC→CCC) | metR‑II ← | homocysteine‑binding DNA‑binding transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,087,769 | 0 | C | G | 7.1% | 176.7 / 3.5 | 56 | R259P (CGC→CCC) | metR‑II | homocysteine‑binding DNA‑binding transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (25/27); new base G (2/2); total (27/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.39e-01 |
CGGGCCTGACGCCACGCTAACACCTGCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAGTACGTACCTGTGCGGGCTCGACGTCGGCGGG > NC_002947/3087624‑3087914 | cGGGCCTGACGCCACGCTAACACCTGCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCt > 7:4656/1‑149 (MQ=255) ggCCTGACGCCACGCTAACACCTGCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTg > 2:343205/1‑149 (MQ=255) cTGACGCCACGCTAACACCTGCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCg < 1:211434/149‑1 (MQ=255) aCGCCACGCTAACACCTGCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGtt < 4:229589/149‑1 (MQ=255) ccACGCTAACACCTGCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACa < 3:158745/149‑1 (MQ=255) acacCTGCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCcgcg > 3:70929/1‑149 (MQ=255) cacCTGCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCcgcgc < 7:6431/149‑1 (MQ=255) acCTGCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCcgcgc > 4:357188/1‑148 (MQ=255) cTGCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCt < 8:7603/126‑1 (MQ=255) cTGCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCt > 7:7603/1‑126 (MQ=255) gCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTGTCAGGCCGTGCTCGCCAAGCGCCTTGGCga < 1:210948/131‑2 (MQ=255) gCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGCGCCTTGGCga > 2:210948/1‑129 (MQ=255) ccAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGtt < 8:66532/131‑1 (MQ=255) ccAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGtt > 7:66532/1‑131 (MQ=255) ccAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACt < 2:122639/148‑1 (MQ=255) aGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTa < 3:121949/149‑1 (MQ=255) gtgAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGt < 3:98207/148‑1 (MQ=255) gtgAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGt < 8:4656/148‑1 (MQ=255) aaCGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATa < 5:127064/125‑1 (MQ=255) aaCGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATa > 6:127064/1‑125 (MQ=255) aaCGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCa < 6:322390/148‑1 (MQ=255) gaTGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGc > 1:64519/1‑142 (MQ=255) gaTGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGc < 2:64519/142‑1 (MQ=255) tCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGtt < 3:357188/149‑1 (MQ=255) cTTGGCCGTGAGCAGAAAATCACGCATGTAGGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTgg > 1:32470/1‑149 (MQ=255) aaaaTCACGCATGTACGGCACCTCCAGCATGACACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCAAAGGCGCTTGGCGGTTACATAGCCGCGCGAAATGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGAcgc > 5:126739/1‑149 (MQ=255) aaaTCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGAcgc < 6:146088/148‑1 (MQ=255) aaTCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGAcgccg > 4:287885/1‑149 (MQ=255) cATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGCGCCTTGGCgagca > 1:251976/1‑82 (MQ=255) cATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGCGCCTTGGCgagca < 2:251976/86‑5 (MQ=255) cGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCaa > 1:149604/1‑149 (MQ=255) ggCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAAc < 4:70929/149‑1 (MQ=255) cATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGcatca > 1:24706/1‑149 (MQ=255) aCTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCAtcatcatca > 1:192840/1‑149 (MQ=255) cTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCAc > 1:62888/1‑149 (MQ=255) tGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACg > 1:137833/1‑149 (MQ=255) gcgcAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGcatcatc < 7:306310/142‑1 (MQ=255) gcgcAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGcatcatc > 8:306310/1‑142 (MQ=255) aGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAg > 3:232184/1‑149 (MQ=255) tGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGtt < 2:137833/149‑1 (MQ=255) tGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGtt < 4:232184/149‑1 (MQ=255) cagcaTAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTc < 2:32470/148‑1 (MQ=255) caTAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGaa < 1:343205/149‑1 (MQ=255) aTAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGaa < 2:192840/148‑1 (MQ=255) gagGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAgtac < 2:24706/149‑1 (MQ=255) gTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAgtacgta > 4:216644/1‑149 (MQ=255) tG‑CAGGACGTGCTCGCAAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTACAGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGACAGTTCTGAAGTACGTACCTGTGc > 2:342205/1‑149 (MQ=255) ccGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAGTACGTACCTGTGCGGGCTc < 2:149604/149‑1 (MQ=255) tGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAGTACGTACCTGTGCGGGCTCGAc < 3:216644/149‑1 (MQ=255) gCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAGTACGTACCTGTGCGGGCTCGACg > 4:17308/1‑149 (MQ=255) tCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAGTACGTACCTGTGCGGGCTCGACGTc > 3:332489/1‑149 (MQ=255) gCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAGTACGTACCt < 4:175256/131‑1 (MQ=255) gCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAGTACGTACCt > 3:175256/1‑131 (MQ=255) gCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAGTACGTACCTGTGCGGGCTCGACGTcg < 2:62888/148‑1 (MQ=255) cAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACCGTCAGTTCTGAAGTACGTACCTGTGCGGGCTCGACGTcggcg > 7:115686/1‑149 (MQ=255) aaGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAGTACGTACCTGTGCGGGCTCGACGTcggcgg > 5:89281/1‑149 (MQ=255) gcgcTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAGTACGTACCTGTGCGGGCTCGACGTCGGCggg > 4:59094/1‑147 (MQ=255) gcgcTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAGTACGTACCTGTGCGGGCTCGACGTCGGCggg < 3:59094/147‑1 (MQ=255) | CGGGCCTGACGCCACGCTAACACCTGCCAGCGTGGTGAACGAGATGTCCTTGGCCGTGAGCAGAAAATCACGCATGTACGGCACCTCCAGCATGTCACTGCGCAGTGCAGCATAGAGGTTTGCCTG‑CAGGCCGTGCTCGCCAAGGCGCTTGGCGGTTACATAGCCGCGCGAACTGTATTCGTGCACGGCCCAGTTGGGCAGGCAGCAGACGCCGCGCCCGGAAGCAACCAGTTGCATCATCATCACGGTCAGTTCTGAAGTACGTACCTGTGCGGGCTCGACGTCGGCGGG > NC_002947/3087624‑3087914 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |