| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 289,942 | C→A | 8.7% | intergenic (+26/‑140) | oprE → / → PP_0235 | outer‑membrane porin E/peroxidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 289,942 | 0 | C | A | 8.7% | 216.6 / 9.3 | 80 | intergenic (+26/‑140) | oprE/PP_0235 | outer‑membrane porin E/peroxidase |
| Reads supporting (aligned to +/- strand): ref base C (36/37); new base A (3/4); total (39/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.25e-01 | |||||||||||
GAAGGCACTCTCAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCGCAGCCCATGAGCCTC > NC_002947/289794‑290090 | gAAGGCACTCTCAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTTGTAGCGTCGAAAGCGCCCTGTACAAAGACCAGACTCTCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGcc < 1:277324/149‑1 (MQ=255)gAAGGCACTCTCAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGcc > 7:271255/1‑149 (MQ=255) gCACTCTCAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGAt < 8:271255/149‑1 (MQ=255) gCACTCTCAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGCCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGAt > 6:314494/1‑149 (MQ=255) aaaGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCATCAGGCGAGGc < 8:93697/148‑1 (MQ=255) aaGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCtt > 2:32791/1‑149 (MQ=255) ccTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGACTGAGGCGAGGCtttttt > 4:114055/1‑149 (MQ=255) cTGGGCTTCAGCATGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCATCAGGCGAGGCttctttt < 6:233137/149‑2 (MQ=255) tGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCTCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCATCAGGCGAGGCttc < 1:60351/144‑2 (MQ=255) tGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTtgt > 8:303287/1‑149 (MQ=255) tGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCATCAGGCGAGGCttc > 2:60351/1‑143 (MQ=255) gCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAATGCCTCGCCTGATGCGAGGCTTTTTTGTGc < 1:209458/149‑1 (MQ=255) ttCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTg > 3:304151/1‑149 (MQ=255) aGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTtgtg > 4:269490/1‑142 (MQ=255) aGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTtgtg < 3:269490/142‑1 (MQ=255) aGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAAAA‑GCCTCGCATCAGGCGAGGCttcttt < 4:261009/139‑1 (MQ=255) aGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAAAA‑GCCTCGCATCAGGCGAGGCttcttt > 3:261009/1‑139 (MQ=255) cTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCtttt < 5:51899/134‑1 (MQ=255) cTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCtttt > 6:51899/1‑134 (MQ=255) cGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGAttt < 4:304151/147‑1 (MQ=255) gTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGCACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTtata < 3:61108/149‑1 (MQ=255) tCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTatat < 5:212046/149‑1 (MQ=255) aaGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGCCTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTCATGCGAGGCTTTTTTGTGCCTGCAGATTTATATg > 1:274684/1‑148 (MQ=255) gtgtCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTAtt > 1:2120/1‑149 (MQ=255) tACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGt > 3:309852/1‑149 (MQ=255) aCCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGtt > 4:347941/1‑149 (MQ=255) ccGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGt < 2:2120/147‑1 (MQ=255) ccGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTta > 8:158342/1‑149 (MQ=255) tGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTtat < 7:276014/132‑1 (MQ=255) tGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTtat > 8:276014/1‑132 (MQ=255) aGCGGCGAAAGCGCCCTGGACACTGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGt > 7:55252/1‑132 (MQ=255) aGCGGCGAAAGCGCCCTGGACAAAGACCAGACTAGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGt < 8:55252/132‑1 (MQ=255) gcggcgAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTAtaaataaa < 6:320552/149‑1 (MQ=255) ggcgAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGAGAGGCTTTTTTGTGACTGCAGATTTATATGTATTTTGGTTATaaataaata > 4:20158/1‑148 (MQ=255) gAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGtt < 8:119453/149‑1 (MQ=255) aaGCTCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACTCTTACAACTTCCTGTAATCCGTATCTTAATAAGAA‑GCCTCGCCTGATTGGAGGCTTTTTTGTGCGTGCAGATTTATATGTATTTTGGTTATAAATAAATTGttat < 5:93670/149‑1 (MQ=255) cccTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGttatttat > 3:9676/1‑148 (MQ=255) cTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCt > 2:203191/1‑149 (MQ=255) gagaaaGACCAGACTCGCTTCATCGTGAACTACAATTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGACTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAATTTGTTATTTATTCttt < 2:274684/145‑1 (MQ=255) aCAAAGACCAGACTCGCTTCATCGTGAATTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCttttt < 2:39838/149‑1 (MQ=255) aaaGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGt > 2:308101/1‑149 (MQ=255) aaaGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGt > 3:36283/1‑149 (MQ=255) gACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGtttt < 7:303287/149‑1 (MQ=255) cAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTaa < 4:36283/149‑1 (MQ=255) gACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑Tc > 6:91828/1‑149 (MQ=255) tCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGAt > 7:161010/1‑149 (MQ=255) cTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTg > 3:351996/1‑148 (MQ=255) cTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGc < 5:71295/149‑1 (MQ=255) ttCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGAt < 4:135890/145‑1 (MQ=255) ttCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGAt > 3:135890/1‑145 (MQ=255) cATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAg < 7:158342/148‑1 (MQ=255) cTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑Tc < 4:52842/131‑1 (MQ=255) cTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑Tc > 3:52842/1‑131 (MQ=255) cTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGACTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTAGTCTTTTTGTTTTAAA‑TCGATTGCAGGCAAATTGaa > 8:69556/1‑149 (MQ=255) tACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAAc < 1:308101/149‑1 (MQ=255) cgatcTTACAACTTCCTTTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAAc < 7:224212/145‑1 (MQ=255) cacTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAAccc < 8:161010/149‑1 (MQ=255) ttACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATa > 1:53204/1‑149 (MQ=255) ttACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GACTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTATTTTTGTTTTTAA‑TCGATTGCAGGAACATTGAACCAATa > 3:296200/1‑149 (MQ=255) aCAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAAc > 8:224212/1‑142 (MQ=255) aCAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACg > 8:97529/1‑149 (MQ=255) cAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAAc > 5:229779/1‑141 (MQ=255) cAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAAc < 6:229779/141‑1 (MQ=255) cAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACgg < 4:309852/149‑1 (MQ=255) aaCTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACgg > 1:357483/1‑148 (MQ=255) aCTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTa < 2:357483/149‑1 (MQ=255) aCTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTa < 5:314494/149‑1 (MQ=255) aCTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTa > 4:24320/1‑149 (MQ=255) aCTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTa < 4:351996/149‑1 (MQ=255) aCTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTAAATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTa < 3:347941/149‑1 (MQ=255) cTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAATTCGATTGCAGGCACATTGAACCCATACGGTa < 1:32791/149‑1 (MQ=255) ttaggcGTAGCTTAAAAATAA‑GCCTCGCCTGATGCGAGGATTTTTTTTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTACAGAAcc < 3:20158/143‑1 (MQ=255) tAAGCTGTAGGTGAATATGAA‑GCCTCGCCTTATGCTAGGCTTTTTTGTTCATGCAGATTTATTTGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAT‑TCGATTGAAGGCACATTGAACCCATACGGTAAAGAAcc < 4:296200/148‑1 (MQ=255) aaGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATGTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTACAGAAcc > 6:364469/1‑147 (MQ=255) aGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTACAGAAcccag < 3:24320/149‑1 (MQ=255) ccGTAGCTGAAAAAGAA‑CCCTCGCCTGCTGCGAGGCTTTTTTGTCCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTAAACTATTTGTTTTTAA‑ACGATTGCAGGCACATTGAACCCAGACGGTACAGACcccagcc > 2:195127/1‑149 (MQ=255) gAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGcc > 4:85790/1‑149 (MQ=255) aaaaaGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGAtt > 8:27706/1‑103 (MQ=255) aaaaaGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGAtt < 7:27706/103‑1 (MQ=255) aaaaaa‑GCCTCGCATCAGGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGGTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGACCCCATACGGGACAGCACCCAGCCCAGGAGCCg > 5:157919/1‑147 (MQ=255) aagaa‑gCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCGCAg < 2:53204/149‑1 (MQ=255) cTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTACACAACCCAGCCCAGGAGCCGCAGCCCATGa < 1:203191/149‑1 (MQ=255) cTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCGCAGCCCATGAGCCTc < 4:9676/149‑1 (MQ=255) | GAAGGCACTCTCAAAGGCCTGGGCTTCAGCCTGCGTCAAGGTGTCTACCGTGGTAGCGGCGAAAGCGCCCTGGACAAAGACCAGACTCGCTTCATCGTGAACTACACTTACAACTTCCTGTAAGCCGTAGCTGAAAAAGAA‑GCCTCGCCTGATGCGAGGCTTTTTTGTGCCTGCAGATTTATATGTATTTTGGTTATAAATAAATTGTTATTTATTCTTTTTGTTTTTAA‑TCGATTGCAGGCACATTGAACCCATACGGTACAGAACCCAGCCCAGGAGCCGCAGCCCATGAGCCTC > NC_002947/289794‑290090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |