Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 290,487 | A→G | 6.4% | T136A (ACC→GCC) | PP_0235 → | peroxidase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 290,487 | 0 | A | G | 6.4% | 176.8 / 2.3 | 62 | T136A (ACC→GCC) | PP_0235 | peroxidase |
Reads supporting (aligned to +/- strand): ref base A (30/28); new base G (2/2); total (32/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01 |
ACACAGAATACCGTGGTCAACTTCCCGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGCGACGAAGTGGTGATCGTGCCTTCACTCAAA > NC_002947/290340‑290633 | acacAGAATACCGTGGTCAACTTCCCGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGAc < 7:214191/149‑1 (MQ=255) acacAGAATACCGTGGTCAACTTCCCGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGAc < 2:312208/149‑1 (MQ=255) acaGAATACCGTGGTCAACTTCCAGATCAATGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGCCCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCACGCTGTTCATCATCGACCCGAATAAAAAGGAGCGAGTGACCa > 8:253866/1‑149 (MQ=255) caGAATACCGTGGTCAACTTCCCGATCATTGCTGACGCTGACCGCAAGCTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCa > 1:209616/1‑148 (MQ=255) aGAATACCGTGGTCAACTTCCCGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGCCCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCAt > 2:261576/1‑148 (MQ=255) aGAATACCGTGGTCAACTTCCCGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCAtt < 3:357888/149‑1 (MQ=255) gattagcGTGGTCAAGTTCCCGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCAGCCGAACGCCAGCGACAGGCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGAGCGCCTGACCATta < 7:253866/143‑1 (MQ=255) aCCGTGGTCAACTTCCCGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATtaccta > 5:245685/1‑149 (MQ=255) cGTGGTCAACTTCCCGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATtacctacc > 1:353576/1‑149 (MQ=255) tCAACTTCCCGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGcc < 6:245685/149‑1 (MQ=255) aaCTTCCCGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCAt < 8:246475/134‑1 (MQ=255) cTTCCCGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTa > 8:338760/1‑149 (MQ=255) cGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCggg < 2:353576/149‑1 (MQ=255) cGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACAACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCggg < 4:223465/149‑1 (MQ=255) aTCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCa > 4:90706/1‑139 (MQ=255) aTCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCa < 3:90706/139‑1 (MQ=255) aTTGCTGACGCTGACCGCAAGGTGTCCGACCTTTAGGCCCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCa > 6:272239/1‑148 (MQ=255) ttGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAAc < 5:303303/149‑1 (MQ=255) ctgacgctgacCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCAtt > 6:45407/1‑119 (MQ=255) ctgacgctgacCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCAtt < 5:45407/119‑1 (MQ=255) ctgacgctgacCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACtt < 2:209616/148‑1 (MQ=255) acgctgacCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCaa < 5:254156/148‑1 (MQ=255) gctgacCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACg > 5:229927/1‑148 (MQ=255) tggTGTCCTACATTTAGCACCTTATCCACCCTACGGCCTCCCAAACCCTTCCCGTGCGCTCGCTGTTATTCATCTACCCTAATAAAATGGTCGGCGTGACCTTTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCgg < 1:261576/148‑1 (MQ=255) aGGTGTACGACCTTTACGACCTGATCCACCCGAACGCCCTCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCgg < 8:15910/149‑1 (MQ=255) cGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATc > 7:39165/1‑148 (MQ=255) ccTTTACGACCTGATCCACCCGAACGCCAGCGCCACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGGCCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACt > 5:340666/1‑149 (MQ=255) ccTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGGCCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACt > 5:335297/1‑149 (MQ=255) ccTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGc > 6:29466/1‑149 (MQ=255) cTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCt > 5:12470/1‑149 (MQ=255) gATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCggg < 4:149365/103‑1 (MQ=255) gATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCggg > 3:149365/1‑103 (MQ=255) tCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGAc < 8:39165/148‑1 (MQ=255) aCCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATta < 5:149796/78‑1 (MQ=255) aCCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATta > 6:149796/1‑78 (MQ=255) cGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAAc < 5:12917/149‑1 (MQ=255) cGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACcaca < 7:338760/149‑1 (MQ=255) cAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGc > 5:264687/1‑78 (MQ=255) cAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGc < 6:264687/78‑1 (MQ=255) gACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGc < 5:272239/149‑1 (MQ=255) ccTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCacac > 4:189265/1‑149 (MQ=255) ccTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCACCTGACCGACAACCACAAGGTCGCCacac > 1:360751/1‑149 (MQ=255) cTGACCGTGCGATCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACAcc < 6:229927/149‑1 (MQ=255) ccGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCgg > 4:178190/1‑148 (MQ=255) cGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAAc < 1:47804/127‑1 (MQ=255) cGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAAc > 2:47804/1‑127 (MQ=255) cgctcgctGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACt < 3:189265/148‑1 (MQ=255) catcatCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGc > 2:268828/1‑148 (MQ=255) atcatcGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGcga > 1:179056/1‑149 (MQ=255) tcatcGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCTCCACACCCGGTAACTGGCAGGACGGcgac > 4:249057/1‑149 (MQ=255) atcGACCCGAATAAAAAGGTGCGCCTGGCCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGcgacg < 6:335297/148‑1 (MQ=255) atcGACCCGAATAAAAAGGTGCGCCTGGCCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGcgacg < 6:340666/148‑1 (MQ=255) tcGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGCGACGaa < 1:268828/149‑1 (MQ=255) cccGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGCGACGAAgtgg < 2:179056/149‑1 (MQ=255) ccGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGCGACGAAgtggt > 3:98154/1‑149 (MQ=255) aaTAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACgg < 6:210412/134‑1 (MQ=255) aaTAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACgg > 5:210412/1‑134 (MQ=255) aaaaaGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGCGACGAAGTGGTGATCGt > 3:64527/1‑149 (MQ=255) aaaaaGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGCGACGAAGTGGTGATCGt > 5:209428/1‑149 (MQ=255) aaaGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGCGACGAAGTGGTGATCGTGc > 7:114102/1‑149 (MQ=255) gACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGCGACGAAGTGGTGATCGTGCCTTCACTCa > 7:179438/1‑146 (MQ=255) gACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGCGACGAAGTGGTGATCGTGCCTTCACTCa > 1:283364/1‑146 (MQ=255) aCCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGCGACGAAGTGGTGATCGTGCCTTCACTCaaa < 3:178190/147‑1 (MQ=255) | ACACAGAATACCGTGGTCAACTTCCCGATCATTGCTGACGCTGACCGCAAGGTGTCCGACCTTTACGACCTGATCCACCCGAACGCCAGCGACACCCTGACCGTGCGCTCGCTGTTCATCATCGACCCGAATAAAAAGGTGCGCCTGACCATTACCTACCCGGCCAGTACCGGGCGCAACTTCAACGAAATTCTGCGGGTGATCGACTCGCTGCAGCTGACCGACAACCACAAGGTCGCCACACCCGGTAACTGGCAGGACGGCGACGAAGTGGTGATCGTGCCTTCACTCAAA > NC_002947/290340‑290633 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |