Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 292,606 | C→G | 9.4% | intergenic (+22/‑38) | ssuA → / → ssuD | aliphatic sulfonatesABC transporter substrate‑binding protein/alkanesulfonate monooxygenase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 292,606 | 0 | C | G | 9.4% | 160.9 / 7.4 | 53 | intergenic (+22/‑38) | ssuA/ssuD | aliphatic sulfonatesABC transporter substrate‑binding protein/alkanesulfonate monooxygenase |
Reads supporting (aligned to +/- strand): ref base C (26/22); new base G (2/3); total (28/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.58e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.06e-01 |
CCCAGAGGTGGTGGCCGCGCAACAGAAGATCGCCGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCACGGTTACCTGCAGCAGAT > NC_002947/292458‑292747 | cccAGAGGTGGTGGCCGCGCAACAGAAGATCGCCGACACCTTCCAGGCGCTCAAGCTGATACCCACGCCGCGGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCGGGAGTGCCTGCCAGGGCCGGGgcgc > 4:237944/1‑149 (MQ=255) ccAGAGGTGGTGGCCGCGCAACAGAAGATCGCCGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGcgcc < 3:335078/149‑1 (MQ=255) gagGTGGTGGCCGCGCAACAGAAGATCGCCGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCgccgcc < 8:283789/149‑1 (MQ=255) ggtggtGGCCGCGCAACAGAAGATCGCCGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGcccc < 2:358570/149‑1 (MQ=255) ggggtggCCGCGCAACAGAAGATCGCCGACACCATCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCg < 6:186219/147‑1 (MQ=255) ggCCGCGCAACAGAAGATCGCCGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGGCGCCCCGGcact < 5:73610/149‑4 (MQ=255) agaagaTCGCCGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTg < 7:131903/149‑1 (MQ=255) gaagaTCGCCGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTga < 5:267289/149‑1 (MQ=255) tCGCCGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGgaga < 7:2005/149‑1 (MQ=255) cGCCGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAgac > 2:119149/1‑149 (MQ=255) ccGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAgacga < 7:334331/149‑1 (MQ=255) cGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAgacgac > 5:194532/1‑149 (MQ=255) cGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAgacgac > 1:291684/1‑149 (MQ=255) cTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAAt < 5:7008/149‑1 (MQ=255) cAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGc < 2:291684/149‑1 (MQ=255) gcgcTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTAGAGGAGACGACTCCAATGAGCCtt < 4:98133/149‑1 (MQ=255) tCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTaga > 1:279399/1‑112 (MQ=255) tCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTaga < 2:279399/112‑1 (MQ=255) aaGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCACCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGTCACCCTTGAGGAGACGACTCAAATGAGACTAAACAtt > 4:240276/1‑149 (MQ=255) aTACCCAAGCCGCTGAGCATCAAGGACGTTATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTTATTGACTGCCAGTGCCGGGGCGCCGCACCGGATTGAGCCACCCTTGAGGTGACGACTCCAATGAGCCTTAACATTTTCTg < 5:134367/148‑1 (MQ=255) ccAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACAtt < 4:306705/139‑1 (MQ=255) ccAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACAtt > 3:306705/1‑139 (MQ=255) cAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTc > 7:37808/1‑121 (MQ=255) atggACGTGTTCTGGACAGCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTATAGTCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGAc < 3:240276/147‑1 (MQ=255) gATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTa > 7:235866/1‑149 (MQ=255) ggACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGCGGAGACGACTCCAATGAGCCTTAACCTTGTCTGGGTCCTCCCCACCCACGGGGCCGGCACGTCCCggg > 8:321944/1‑149 (MQ=255) ccccTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTg > 3:242856/1‑108 (MQ=255) ccccTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTg < 4:242856/108‑1 (MQ=255) ccccTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACtt > 6:84444/1‑149 (MQ=255) cTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTcc > 5:97171/1‑148 (MQ=255) ccAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAg > 8:278066/1‑149 (MQ=255) aaaGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGgc > 6:198246/1‑149 (MQ=255) aaGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTtcctc < 4:34641/106‑1 (MQ=255) aaGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTtcctc > 3:34641/1‑106 (MQ=255) cgcgcCTTGATTGTCTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGt < 3:237944/149‑1 (MQ=255) cgcgcCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGt > 3:147573/1‑149 (MQ=255) gcgcCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTACTCCCCACCCACGGTGACGGCaa > 7:206603/1‑115 (MQ=255) ccTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGAc < 5:84444/149‑1 (MQ=255) cTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGAcc > 6:40381/1‑149 (MQ=255) ttgattgaCTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCa > 6:196910/1‑149 (MQ=255) gattgaCTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCt > 6:27246/1‑80 (MQ=255) gattgaCTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCa < 1:119149/147‑1 (MQ=255) aCTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCACGGTTAc < 5:196910/149‑1 (MQ=255) tGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCACGGTTACCt > 2:138971/1‑149 (MQ=255) ccAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTgg < 4:137161/107‑1 (MQ=255) ccAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTgg > 3:137161/1‑107 (MQ=255) ccAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACCGCAAGTACCTGGGCACTTCCGAAGGCGCCCGTGCGGTCGACCACGGTTAcgag > 8:136813/1‑145 (MQ=255) tctagCCGGGGCGGCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCACg < 6:225233/135‑1 (MQ=255) tctagCCGGGGCGGCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCACg > 5:225233/5‑139 (MQ=255) tctagCCGGGGCGGCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCACg < 3:79112/135‑1 (MQ=255) tctagCCGGGGCGGCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACACACGGTGACGGCAAGTAACTGGGCACTTCCGAAGGCGCACCTGCGGACGACCACg > 4:79112/5‑139 (MQ=255) cAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCACGGTTACCTg > 4:163964/1‑147 (MQ=255) gTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCACGGTTACCTgcagc < 8:235866/149‑1 (MQ=255) cGGGGCGCCTCCCCGGATAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCACGGTTACCTGCAGCAGAt < 7:321944/149‑1 (MQ=255) ggggCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCACGGTTACCTgcag > 2:196031/1‑143 (MQ=255) ggggCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCACGGTTACCTgcag > 8:325472/1‑143 (MQ=255) | CCCAGAGGTGGTGGCCGCGCAACAGAAGATCGCCGACACCTTCCAGGCGCTCAAGCTGATACCCAAGCCGCTGAGCATCAAGGACGTGATCTGGACACCCCCTGCCAAAGTCGCTAGCGCGCCTTGATTGACTGCCAGTGCCGGGGCGCCGCCCCGGCTAGAGCCACCCTTGAGGAGACGACTCCAATGAGCCTTAACATTTTCTGGTTCCTCCCCACCCACGGTGACGGCAAGTACCTGGGCACTTCCGAAGGCGCACGTGCGGTCGACCACGGTTACCTGCAGCAGAT > NC_002947/292458‑292747 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |