Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,534,772 | G→T | 9.7% | intergenic (+59/‑96) | atoB → / → PP_3124 | 3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,534,772 | 0 | G | T | 9.7% | 178.0 / 5.6 | 58 | intergenic (+59/‑96) | atoB/PP_3124 | 3‑oxoacid CoA‑transferase subunit B/short chain fatty acid transporter |
Reads supporting (aligned to +/- strand): ref base G (29/23); new base T (4/2); total (33/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.90e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
GCGCCTGGGGTCAGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCTTTGCCTTGCGCTGC > NC_002947/3534627‑3534918 | gcgcCTGGGGTCAGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGAcc > 6:174408/1‑149 (MQ=255) cTGGGGTCAGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGAccgccg < 8:306785/149‑1 (MQ=255) gggTCAGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCAt > 5:289646/1‑149 (MQ=255) aGCGTCGAGGAAATCATCGAGAACACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTcgcg < 5:118788/149‑1 (MQ=255) gCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTcgc > 6:361564/1‑147 (MQ=255) gCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTcgc < 5:361564/147‑1 (MQ=255) gAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAg > 2:231946/1‑149 (MQ=255) gAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAg > 2:330395/1‑149 (MQ=255) tcatcGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTc < 2:148582/149‑1 (MQ=255) atcGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTcc > 6:111620/1‑148 (MQ=255) tcGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTa > 1:265005/1‑149 (MQ=255) tcGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTa > 1:363432/1‑149 (MQ=255) cGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTAc < 5:111620/149‑1 (MQ=255) gagaAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTAc < 6:353981/148‑1 (MQ=255) gagaAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACa < 2:265005/149‑1 (MQ=255) aaCCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGttt > 8:155101/1‑149 (MQ=255) gccgGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTg < 1:152015/149‑1 (MQ=255) ggCAAACTGATCGTGCCGGATGATGTTAAGGAAATGACCTTCTAAGGCATGACGTGATCTAACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATAGAACCCCGCATTCGCGGGT‑AACCCTGTTCCTACAGGTTTTTTGCGt > 5:312631/1‑149 (MQ=38) aTCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGTAAAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTgg < 1:231946/148‑1 (MQ=255) tCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTACTACAGGTTTTTTGCGTTGCCTGGCaa > 6:94428/1‑149 (MQ=255) atgatgTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTc < 5:174408/149‑1 (MQ=255) aaGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGAGTTTACCCCCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCAt > 7:317574/1‑148 (MQ=255) aaaTGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAAc < 5:94428/149‑1 (MQ=255) aaTGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATTAGTCGGTAAAATTACCCCCGCAATAGCGGGT‑AAGCCTGTTAGAAAAAGTTTTTTTAGTTGACAGGCCATAAACCTTAATACCaaaaaaa > 2:349792/1‑147 (MQ=255) aTGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCa < 6:289646/149‑1 (MQ=255) cTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAACCCAATAAAAg > 7:273019/1‑148 (MQ=255) cTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAg > 1:232748/1‑148 (MQ=255) cTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAg > 2:301765/1‑148 (MQ=255) aGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATc > 1:259745/1‑127 (MQ=255) aGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATc < 2:259745/127‑1 (MQ=255) aTGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCaa < 6:175643/135‑1 (MQ=255) aTGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCaa > 5:175643/1‑135 (MQ=255) gTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTg > 4:256419/1‑149 (MQ=255) gTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTg < 1:255453/149‑1 (MQ=255) gATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTgg < 2:363432/148‑1 (MQ=255) aTCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGc < 3:256419/148‑1 (MQ=255) tcACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCt > 3:164517/1‑149 (MQ=255) tcACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCt > 6:166472/1‑149 (MQ=255) aCCCTGTAGGCGCGGGTTTACCCGCGAATGTGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTg > 3:358649/1‑148 (MQ=255) aCCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTg > 4:313838/1‑148 (MQ=255) ccTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAAc > 5:289596/1‑117 (MQ=255) ccTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAAc < 6:289596/117‑1 (MQ=255) tAGGCGCGGGTTTACCCGCGAATGTGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCa < 4:358649/149‑1 (MQ=255) attcgcgGGTAAACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCACATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCa > 8:155766/4‑148 (MQ=255) cccGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCcg > 3:81175/1‑149 (MQ=255) ccGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCcgc > 8:249900/1‑149 (MQ=255) ccGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCagc > 2:44774/1‑149 (MQ=255) ccGCGAATGCGGCGGTCAATGTACCGACGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATaaaa > 3:231867/1‑106 (MQ=25) ccGCGAATGCGGCGGTCAATGTACCGACGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATaaaa < 4:231867/106‑1 (MQ=25) ccGCGAATGCGGCGGTCAATGTACCGACGCATTCGCGGGT‑AAACCCGCGCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCaa < 2:291953/135‑1 (MQ=21) ccGCGAATGCGGCGGTCAATGTACAGACGCATTCGCGGGT‑AAACCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTAAAACGTGGCAGGTGAAATTCaa > 7:54125/1‑135 (MQ=25) aTGCGGCGGTCAATGTACCGACGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTGCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCtt > 5:344348/1‑149 (MQ=38) tGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCttt < 4:81175/149‑1 (MQ=255) tGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCttt < 3:313838/149‑1 (MQ=255) cGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCTTTGc < 5:83283/149‑1 (MQ=255) ttCGGTACATTGACCTCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACTGCCGCTCCGCGCGCTTTGcc < 6:312631/148‑1 (MQ=255) gTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCTTTGCCTTgc > 1:156395/1‑149 (MQ=255) ttGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCTTTGCCTTGCgctgc > 3:192268/1‑149 (MQ=255) | GCGCCTGGGGTCAGCGTCGAGGAAATCATCGAGAAAACCGCCGGCAAACTGATCGTGCCGGATGATGTGAAGGAAATGACCTTCTAAGGCATGACGTGATCTCACCCTGTAGGCGCGGGTTTACCCGCGAATGCGTCGGTACATTGACCGCCGCATTCGCGGGT‑AAGCCTGTTCCTACAGGTTTTTTGCGTTGCCTGGCAATACCGCTTCATCCCATAAAACCAATAAAAGGAATTCAACCGTGGCCGCTGAAATTCAAGACAGCCGCTCCGCGCGCTTTGCCTTGCGCTGC > NC_002947/3534627‑3534918 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |