Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 3,624,144 | G→C | 10.1% | intergenic (‑92/+81) | PP_3194 ← / ← PP_3195 | hypothetical protein/hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 3,624,144 | 0 | G | C | 10.1% | 161.9 / 6.8 | 58 | intergenic (‑92/+81) | PP_3194/PP_3195 | hypothetical protein/hypothetical protein |
Reads supporting (aligned to +/- strand): ref base G (31/21); new base C (4/2); total (35/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.57e-01 |
GCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCGGCATTGATG > NC_002947/3624005‑3624288 | gCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATAc > 1:193129/1‑149 (MQ=255) gCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATAc > 5:145747/1‑149 (MQ=255) ccAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGCC‑ATCGATAcc < 1:253302/149‑1 (MQ=255) ccAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGCC‑ATCGATAcc < 5:314025/149‑1 (MQ=255) tCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑At > 5:366626/1‑133 (MQ=255) tCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑At < 6:366626/133‑1 (MQ=255) aCAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTgg > 4:341194/1‑149 (MQ=255) ggtctctcAGTTCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTACCGATGGC‑ATCGATACCTGGCGCTCTCTGgc < 4:192519/139‑1 (MQ=255) ggTGGAGCAGTGCAGGTGCAGGGCACTGATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGgcgc < 2:187633/148‑1 (MQ=255) ggTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGTCTGGCCGGCAGCCGCTGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGgc > 3:192519/1‑146 (MQ=255) ggTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGgcgc > 1:187633/1‑148 (MQ=255) aggtgcaggGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACgg > 1:99597/1‑149 (MQ=255) gtgcaggGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGgcg > 2:67604/1‑149 (MQ=255) tgcaggGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGgcgc > 1:3336/1‑149 (MQ=255) caggGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGcc > 4:93354/1‑148 (MQ=255) ggCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATc > 8:172421/1‑149 (MQ=255) ggCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGACCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATc > 1:174932/1‑149 (MQ=255) cACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCgg < 1:67604/149‑1 (MQ=255) aCTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGgc < 2:99597/149‑1 (MQ=255) aCTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGgc < 2:193129/149‑1 (MQ=255) tGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCGATTGGcgccgttctc < 6:103163/149‑6 (MQ=255) tGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCaa < 7:172421/149‑1 (MQ=255) tctcATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAggg > 4:222748/1‑149 (MQ=255) aTCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCgg > 7:125216/1‑149 (MQ=255) tgCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAg < 3:341194/149‑1 (MQ=255) gCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACATGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAgg > 6:280160/1‑149 (MQ=255) taggctGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGTCCGtgtg > 6:250770/1‑149 (MQ=255) gCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAg > 4:308548/1‑149 (MQ=255) cGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAgg < 3:308548/149‑1 (MQ=255) gACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGCGATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGcc > 1:79566/1‑125 (MQ=255) gACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGgc > 4:304936/1‑87 (MQ=255) gACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGgc < 3:304936/87‑1 (MQ=255) gACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGcc < 2:79566/124‑1 (MQ=255) ccGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCgg < 5:250770/149‑1 (MQ=255) ggCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCgg > 6:81535/1‑147 (MQ=255) ggCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCgg < 5:81535/147‑1 (MQ=255) ggCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGA‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGc > 3:49692/1‑148 (MQ=255) gCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGa < 5:280160/149‑1 (MQ=255) aCCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATc < 6:145747/149‑1 (MQ=255) cagcagATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATc > 4:356133/1‑147 (MQ=255) gcagATGCTATTGATGGCCAGGTATCGATGGC‑ATCTATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAgg < 7:53414/133‑1 (MQ=255) gcagATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAgg > 8:53414/1‑133 (MQ=255) gcagATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGt < 2:3336/149‑1 (MQ=255) cagATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTc > 5:166463/1‑149 (MQ=255) gCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGc > 3:180017/1‑97 (MQ=255) ttGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTa < 5:157189/149‑1 (MQ=255) tGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGc > 8:26541/1‑149 (MQ=255) cgCCAGGTATCGATGCC‑ATCGATACCTGGTGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGcc > 5:208897/2‑149 (MQ=255) ccAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGgcg < 4:187832/56‑1 (MQ=255) ccAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGgcg > 3:187832/1‑56 (MQ=255) ccAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCg > 2:99591/1‑149 (MQ=255) cAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGgccgcc < 8:94454/111‑1 (MQ=255) cAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGCTGTAGTGCCggg > 8:298220/1‑149 (MQ=255) cAGGTATCGATGCC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCgg > 3:269981/1‑149 (MQ=255) cAGGTATCGATGCC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCgg > 1:353935/1‑149 (MQ=255) cAGGTATCGATGCC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCgg > 5:268826/1‑149 (MQ=255) gTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCGGCAt > 4:197563/1‑149 (MQ=255) gATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCGGCATTGATg > 5:290257/1‑149 (MQ=255) | GCCAGTGCCGTCGAACAGGGTGGAGCAGTGCAGGTGCAGGGCACTCATTGGTGAGCTCTCTCATCTTGGGGGTGGTGCAAGGCTAGGCTGTGGCGACTGCCCGGCACCAGCAGATGCTATTGATGGCCAGGTATCGATGGC‑ATCGATACCTGGCGCTCTCTGGCGCAGAAACGAGAACGGCGCCAATCGGCGCCGCCCAAGCCAGGGCCGGCAGCGCCGATCAGGCCGTGTGGCCGCCAAGGGTTTCGGCGATCCAGTCGGCGATGTAGTGCCCGGCATTGATG > NC_002947/3624005‑3624288 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |