Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 3,795,836 G→A 7.2% D206D (GAC→GAT fcs ← feruloyl‑CoA‑synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029473,795,8360GA 7.2% 163.3 / 2.1 55D206D (GAC→GATfcsferuloyl‑CoA‑synthetase
Reads supporting (aligned to +/- strand):  ref base G (23/28);  new base A (2/2);  total (25/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGCAGAAGCATCTGCTGATTGGCGCACAGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTCCAGCACCGCCTCGAAGGCGCGCTGGAACGGCTGGCTGTCGCTGACGAAGACCACTCCGGGG  >  NC_002947/3795693‑3795983
                                                                                                                                                |                                                                                                                                                   
tGCAGAAGCATCTGCTGATTGGCGCACAGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCAcc                                                                                                                                                >  5:86976/1‑149 (MQ=255)
tGCAGAAGCATCTGCTGATTGGCGCACAGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCAcc                                                                                                                                                >  7:339872/1‑149 (MQ=255)
  cAGAAGCATCTGCTGATTGGCGCACAGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCAcc                                                                                                                                                <  6:309110/147‑1 (MQ=255)
     aaGCATCTGCTGATTGGCGCACAGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGATCACCCGGtt                                                                                                                                           >  5:137512/1‑149 (MQ=255)
     aaGCATCTGCTGATTGGCGCACAGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCACATCGGCCGCCGCCAGGTCACCCGGtt                                                                                                                                           >  3:302313/1‑149 (MQ=255)
     aaGCATCTGCTGATTGGCGCACAGCATGCGCTGGGTGGTGATCACCGCCTTCGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCAGGTGTCGGCGAAAGCCGCATCGGACGCCGCCAGATCACCCGGtt                                                                                                                                           >  3:309538/1‑149 (MQ=255)
           ctgctgATTGGCGCACAGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCaa                                                                                                                                       >  8:226254/1‑147 (MQ=255)
            tgctgATTGGCGCACAGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAg                                                                                                                                    >  7:32981/1‑149 (MQ=255)
              ctgATTGGCGCACAGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCAATCGGCCGCCGCCAGGTCACCCGGTTGCAACAg                                                                                                                                    <  1:47359/148‑1 (MQ=255)
                    ggCGCACAGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGAGGGTGGCCGGCCCGGTGCCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTGGCAACAGGCTGTCg                                                                                                                             <  8:255006/148‑1 (MQ=255)
                     gcgcACAGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGaa                                                                                                                           <  4:103910/149‑1 (MQ=255)
                         acaGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCtt                                                                                                                       <  6:86976/149‑1 (MQ=255)
                         acaGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCtt                                                                                                                       <  6:81237/149‑1 (MQ=255)
                              aTGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATg                                                                                                                  >  6:19513/1‑149 (MQ=255)
                                    tGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGt                                                                                                                               >  2:274961/1‑130 (MQ=255)
                                    tGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGt                                                                                                                               <  1:274961/130‑1 (MQ=255)
                                        tggtgATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTg                                                                                                                                          >  6:43172/1‑115 (MQ=255)
                                        tggtgATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTg                                                                                                                                          <  5:43172/115‑1 (MQ=255)
                                        tggtgATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGgcgacct                                                                                                        >  4:341842/1‑149 (MQ=255)
                                          gtgATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGgcgacctgc                                                                                                      <  7:226254/149‑1 (MQ=255)
                                             aTCACGGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAATAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGAATCGGCCGCCGCCAGATCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGgcgacctgcgac                                                                                                   <  4:309538/149‑1 (MQ=255)
                                             aTCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGgcgacctgcgac                                                                                                   <  5:2740/149‑1 (MQ=255)
                                             aTCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGgcgacctgcga                                                                                                    <  5:19513/148‑1 (MQ=255)
                                             aTCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGgcgacctgcga                                                                                                    <  5:125327/148‑1 (MQ=255)
                                             aTCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGATCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGgcgacctgcgac                                                                                                   <  6:137512/149‑1 (MQ=255)
                                               cACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGgcgacctgcgacct                                                                                                 <  3:341842/149‑1 (MQ=255)
                                               cACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGgcgacctgcgacct                                                                                                 >  2:161496/1‑149 (MQ=255)
                                                  cGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGc                                                                                              <  8:32981/149‑1 (MQ=255)
                                                   gCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCACATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGcc                                                                                             <  4:302313/149‑1 (MQ=255)
                                                      ttGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCcacg                                                                                          >  4:122496/1‑149 (MQ=255)
                                                        gggCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCcacgc                                                                                         <  8:246883/148‑1 (MQ=255)
                                                                     gAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCcac                                                                                           <  3:127927/133‑1 (MQ=255)
                                                                     gAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCcac                                                                                           >  4:127927/1‑133 (MQ=255)
                                                                       gCCCGAGGTGAAGAGGAATTTGGTGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGccga                                                                         >  3:122486/1‑149 (MQ=255)
                                                                        cccGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGccgac                                                                        <  1:161496/149‑1 (MQ=255)
                                                                          cGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGccgacc                                                                       >  3:83512/1‑148 (MQ=255)
                                                                                 aaGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGt                                                                <  3:122496/148‑1 (MQ=255)
                                                                                  agagGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTc                                                               <  4:83512/148‑1 (MQ=255)
                                                                                   gagGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGt                                                                >  6:126542/1‑146 (MQ=255)
                                                                                   gagGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGt                                                                <  5:126542/146‑1 (MQ=255)
                                                                                           tGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGTCCGCCGCAAGGTCACCCGGTTGAAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCAACGAACGCTGATCACTCCGAGCGAATc                                                                  >  4:29609/1‑136 (MQ=255)
                                                                                           tGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATc                                                                  <  3:29607/136‑1 (MQ=255)
                                                                                           tGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATc                                                                  >  4:29607/1‑136 (MQ=255)
                                                                                           tGGCGATGCTGTCCGCCCCGGTGGCGGCGAAAGCCTCATCGGCCGCCGACAGGTAACCCGGATGCAACAGGCTGTCGAACCATATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATc                                                                  <  3:29609/136‑1 (MQ=255)
                                                                                                         ggCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTCCAGCACCGCCTCGAAGgcgcg                                          >  3:18268/1‑146 (MQ=255)
                                                                                                         ggCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTCCAGCACCGCCTCGAAGgcgcg                                          <  4:18268/146‑1 (MQ=255)
                                                                                                          gCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTCCAGCACCGCCTCGAAGGCGCGCTgg                                      <  6:240903/149‑1 (MQ=255)
                                                                                                             cGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTCCAGCACCGCCTCGAAGGCGCGCTGGAAc                                   >  2:209985/1‑149 (MQ=255)
                                                                                                                     gcgAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGccgacc                                                                       >  6:207526/1‑105 (MQ=255)
                                                                                                                     gcgAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGccgacc                                                                       <  5:207526/105‑1 (MQ=255)
                                                                                                                       gAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTCCAGCACCGCCTCGAAGGCGCGCTGGAACGGCTGGCTGt                         >  4:249964/1‑149 (MQ=255)
                                                                                                                             cGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTCCAGCACCGCCTCGAAGGCGCGCTGGAACGGCTGGCTGTCGCTGa                   <  1:209985/149‑1 (MQ=255)
                                                                                                                                     gccgccgccAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTCCAGCACCGCCTCGAAGGCGCGCTGGAACGGCTGGCTGTCGCTGACGAAGAc            >  6:357227/1‑149 (MQ=255)
                                                                                                                                     gacgccgccAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTTTATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTCCAGCACCGCCTCGAAGGCGCGCTGGAACGGCTGGCTGTCGCTGACGAAGAc            >  6:109878/3‑149 (MQ=255)
                                                                                                                                      tcgccgccAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTCCAGCACCGCCTCGAAGGCGCGCTGGAACGGCTGGCTGTCGCTGACGAAGAc            <  1:21144/147‑1 (MQ=255)
                                                                                                                                               ggTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTCCAGCACCGCCTCGAAGGCGCGCTGGAACGGCTGGCTGTCGCTGACGAAGACCACTCCgggg  <  3:249964/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
TGCAGAAGCATCTGCTGATTGGCGCACAGCATGCGCTGGGTGGTGATCACCGCCTTGGGCAGCTTGGTCGAGCCCGAGGTGAAGAGGAATTTGGCGATGGTGTCCGGCCCGGTGGCGGCGAAAGCCGCATCGGCCGCCGCCAGGTCACCCGGTTGCAACAGGCTGTCGAAGCTTATATGGGGGCGACCTGCGACCTGGCCACGCACGCTGATCACGCCGACCGAATCGTCCAGCACCGCCTCGAAGGCGCGCTGGAACGGCTGGCTGTCGCTGACGAAGACCACTCCGGGG  >  NC_002947/3795693‑3795983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: