| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,853,771 | T→C | 6.4% | intergenic (+54/+28) | PP_3401 → / ← PP_3402 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,853,771 | 0 | T | C | 6.4% | 227.2 / 4.1 | 78 | intergenic (+54/+28) | PP_3401/PP_3402 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (41/32); new base C (2/3); total (43/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.43e-01 | |||||||||||
CTTCGTCTGGGATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTC > NC_002947/3853624‑3853916 | cTTCGTCTGGGATGGGCGGAGTTATCACGGCGTGGTTCGCGATAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTg > 1:252866/1‑149 (MQ=255) ggTCTTGGATGGGCGGAGTTATCACGTCGTGGTTAGCGAGAAGGGAAAGTGCGGCGACGTTTGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTggg < 6:93306/147‑1 (MQ=255) cGTCTGGGATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTgg < 4:326675/147‑1 (MQ=255) tGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGCCGGGGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGTCAGCCCAGGCTGGCCgggt < 7:205641/149‑2 (MQ=255) gCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGc > 2:347239/1‑137 (MQ=255) gCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGc < 1:347239/137‑1 (MQ=255) tCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGAc > 6:76931/1‑143 (MQ=255) tCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGAc < 5:76931/143‑1 (MQ=255) tCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCATGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGgcgc > 6:234126/1‑149 (MQ=255) aCGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGgcgcgc > 7:255068/1‑149 (MQ=255) gTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAgg < 8:255068/149‑1 (MQ=255) gTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAgg > 3:213956/1‑149 (MQ=255) gcgAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCg < 5:1085/148‑1 (MQ=255) cgAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTc > 4:148030/1‑138 (MQ=255) cgAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTc < 3:148030/138‑1 (MQ=255) cgAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGcc < 3:279832/149‑1 (MQ=255) agaAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCtt < 2:252866/149‑1 (MQ=255) agaAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCtt < 4:213956/149‑1 (MQ=255) agaAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCtt < 3:28052/149‑1 (MQ=255) aGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAg < 3:31293/149‑1 (MQ=255) gcgACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTg > 6:132937/1‑149 (MQ=255) aCGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGc > 6:56547/1‑148 (MQ=255) aCGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGc > 1:324338/1‑148 (MQ=255) cTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCacgc > 5:54722/1‑148 (MQ=255) ccTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCacgcaacgca > 4:110037/1‑149 (MQ=255) ctgctgctgGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCAt > 3:1093/1‑149 (MQ=255) ctgctgctgGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCAt > 2:359013/1‑149 (MQ=255) ctgctgctgGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCAt < 4:1093/149‑1 (MQ=255) tgctgGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAg > 1:6502/1‑149 (MQ=255) ggAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCacgcaacg > 3:344344/1‑138 (MQ=255) ggAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCacgcaacg < 4:344344/138‑1 (MQ=255) tGCAATAAGCCGATCAGCGGCGGCCGTGGGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTcca > 1:210842/1‑149 (MQ=255) tGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCgg < 4:4431/116‑1 (MQ=255) tGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCgg > 3:4431/1‑116 (MQ=255) cAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTccac > 3:297082/1‑147 (MQ=255) aaTAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAg > 7:108050/1‑149 (MQ=255) aTAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAgg > 4:67974/1‑149 (MQ=255) aTAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAgg < 2:324338/149‑1 (MQ=255) tAAGCCGATCAGCGGCGGTCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGt > 6:145670/1‑149 (MQ=255) aaGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCAt < 5:335820/130‑1 (MQ=255) aaGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCAt > 6:335820/1‑130 (MQ=255) aGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGtt > 2:348105/1‑148 (MQ=255) aGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGtt < 6:72715/148‑1 (MQ=255) aGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACACAACGCATGCAGCTGCTCCACCAGGtt > 2:107069/1‑148 (MQ=255) ccGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGTGGGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGa < 1:83515/149‑1 (MQ=255) gcggcgGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCa > 1:219473/1‑149 (MQ=255) gcggcCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGa < 3:67974/149‑1 (MQ=255) ggcCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGAc > 2:128768/1‑148 (MQ=255) ccGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGa < 2:47961/134‑1 (MQ=255) ccGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCAAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGa > 1:47961/1‑134 (MQ=255) cGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACt > 6:304110/1‑149 (MQ=255) gT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTg < 8:108050/149‑1 (MQ=255) gCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTg < 5:132937/149‑1 (MQ=255) cACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAg < 3:253495/149‑1 (MQ=255) gTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTg > 2:278541/1‑148 (MQ=255) ctTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGa < 3:7058/149‑1 (MQ=255) ctTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGa > 4:7058/1‑149 (MQ=255) ctTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGa > 3:34379/1‑149 (MQ=255) aCCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCg > 7:312417/1‑149 (MQ=255) aCCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCg > 5:2988/1‑149 (MQ=255) aCCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCg > 6:187386/1‑149 (MQ=255) cccGGTCAGCCCAGGCTGGCCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCacgcaacgca < 5:58156/85‑1 (MQ=38) cccGGTCAGCCCAGGCTGGCCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCacgcaacgca > 6:58156/1‑85 (MQ=38) cccGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGt > 1:109509/1‑149 (MQ=255) cccgCCACCCTGGGCTGACCGGGGCACCACAGGCCCGCTCAGGCAAACGCCTTGAGT‑GGCGGCGGGTGGCTATCAAGCAACCCATGCAGCAGCTCCACCAGGTTGACCAGGTAACGACAACAGTTGAGGTAGTGCAGCGCCAccccct > 6:314423/4‑146 (MQ=255) ccGGTCAGCCCAGGCTGGCCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGtt > 2:322592/1‑149 (MQ=255) ccGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGa > 3:210978/1‑142 (MQ=255) ccGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGa < 4:210978/142‑1 (MQ=255) ccGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGtt < 2:210842/149‑1 (MQ=255) ccGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGtt < 5:234126/149‑1 (MQ=255) ggtcAGCCCAGGCTGGCCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGa < 1:322592/146‑1 (MQ=255) ccAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAgg < 3:110037/149‑1 (MQ=255) ccAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAgc > 1:310565/1‑148 (MQ=255) cAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAggg > 7:185883/1‑149 (MQ=255) cAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAggg > 8:244856/1‑149 (MQ=255) aGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGt < 5:304110/149‑1 (MQ=255) gCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTc < 1:348105/149‑1 (MQ=255) gCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTc < 5:56547/149‑1 (MQ=255) | CTTCGTCTGGGATGGGCGGAGTTATCACGGCGTGGTTCGCGAGAAGGGAAAGTGCGGCGACGGTGGCCTGAACCTGCTGCTGGAACTGCAATAAGCCGATCAGCGGCGGCCGT‑GGCCACGCTCGTGGCTGCTTATACCCGGCCAGCCTGGGCTGACCGGGGCACGACAGGCGCGCTCAGGCAATCGCCTTGAGT‑GGCGCCGGGTGGCTATCACGCAACGCATGCAGCTGCTCCACCAGGTTGACCAGGTCACGACAACTGTTGAGGTCTTGCAGCGCGACCCCGTTGAGGGTC > NC_002947/3853624‑3853916 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |