Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,050,675 | C→T | 8.0% | G236G (GGC→GGT) | oprB‑III → | carbohydrate‑selective porin |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,050,675 | 0 | C | T | 8.0% | 182.3 / 3.3 | 63 | G236G (GGC→GGT) | oprB‑III | carbohydrate‑selective porin |
Reads supporting (aligned to +/- strand): ref base C (29/28); new base T (3/2); total (32/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.64e-01 |
CAATTACCCCAACGCCCACCTCGGCGTGCGCGTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAGTGTCCGGCCGAGGTGGCCATTACCTGCTGG > NC_002947/4050528‑4050820 | cAATTACCCCAACGCCCACCTCGGCGTGCGCGTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCa > 6:183304/1‑149 (MQ=255) cAACGCCCACCTCGGCGTGCGCGTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGTAccacggtgc > 5:296640/1‑142 (MQ=255) cccACCTCGGCGTGCGCGTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGTACCACGGTGCCGGtg < 6:367858/149‑2 (MQ=255) ccACCTCGGCGTGCGCGTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAg < 3:128009/149‑1 (MQ=255) aCCTCGGCGTGCGCGTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGaa > 5:142182/1‑149 (MQ=255) aCCTCGGCGTGCGCGTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGaa > 2:51973/1‑149 (MQ=255) cTCGGCGTGCGCGTGAAGTACGACCTGTCAGCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACt < 5:40389/149‑1 (MQ=255) gTGCGCGTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCAcc > 6:64601/1‑126 (MQ=255) cgcgTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATAc > 5:59091/1‑147 (MQ=255) cgTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTAc < 3:280999/128‑1 (MQ=255) cgTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTAc > 4:280999/1‑128 (MQ=255) gTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAg < 2:99749/147‑1 (MQ=255) gTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAg > 1:99749/1‑147 (MQ=255) aaGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCa < 6:345858/115‑1 (MQ=255) aaGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCa > 5:345858/1‑115 (MQ=255) aGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAg < 5:183304/149‑1 (MQ=255) gTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAgg < 6:142182/149‑1 (MQ=255) tACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGt < 6:228743/134‑1 (MQ=255) tACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGt > 5:228743/1‑134 (MQ=255) cGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTg < 4:147787/149‑1 (MQ=255) aCCTGTCAGCTGCCTGGCAGTTGCGCTTGGCGTCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGaa < 7:159840/149‑1 (MQ=255) aCCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAg > 2:68282/1‑149 (MQ=255) aCCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAg > 8:168119/1‑149 (MQ=255) cctccccgGCAGTGGCGCCGGGCGGCGTCCAACCGCGACCCCGACCGCAACGGCACCTCCCGCCGCCCCTGGCACCTCGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTCCCGGGCGAACTGCCAgg < 8:252647/149‑1 (MQ=255) cctgGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAg < 3:53849/149‑1 (MQ=255) gCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTAc > 7:22162/1‑148 (MQ=255) cAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACaa < 6:224589/149‑1 (MQ=255) cgcgTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTg < 1:51973/148‑1 (MQ=255) cgTTCAACGTCGACCCCGAAAGCAACGGCAACTCGAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTtagtactac < 3:138961/149‑1 (MQ=255) gTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTgg > 5:178728/1‑95 (MQ=255) gTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTgg < 6:178728/95‑1 (MQ=255) cAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGa > 7:317349/1‑147 (MQ=255) aCGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTtac < 5:36217/137‑1 (MQ=255) aCGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTtac > 6:36217/1‑137 (MQ=255) gTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGctc < 8:22162/149‑1 (MQ=255) aCCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGAt < 1:68282/149‑1 (MQ=255) ccGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGAtgt > 6:77020/1‑148 (MQ=255) aaCTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAg < 7:168119/149‑1 (MQ=255) cAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCa < 4:341013/143‑1 (MQ=255) cAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCa > 3:341013/1‑143 (MQ=255) cAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCgat < 5:77020/148‑1 (MQ=255) aGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCgatga > 2:5209/1‑149 (MQ=255) cTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAgg > 6:129897/1‑81 (MQ=255) cTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAgg < 5:129897/81‑1 (MQ=255) cTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAgtgt > 2:228997/1‑149 (MQ=255) tGGCAGCTGGGGCCCAAGCACACCACCGGGACCGTGGTACCGGTAGAAGTGGTATACAAGCTGCAGTCTGAAGTGCCAGGCGAGTAGAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATTAAGTGTc < 6:121598/149‑1 (MQ=255) gCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAGTGTCCg > 3:167885/1‑149 (MQ=255) gggCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAGTGTCCGGCCGAgg > 4:80054/1‑149 (MQ=255) cccAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAGTGTCCGGCCGAGGTgg > 5:10919/1‑149 (MQ=255) ccAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAGTGTCCGGCCGAGGTGGc > 6:225916/1‑149 (MQ=255) acacCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAGTGTCCGGCCGAGGTGGCCATTAc < 8:317349/149‑1 (MQ=255) accaccGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTg > 7:289290/1‑73 (MQ=255) accaccGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTg < 8:289290/73‑1 (MQ=255) accaccGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAGTGTCCGGCCGAGGTGGCCAtt < 5:213330/145‑1 (MQ=255) accaccGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAGTGTCCGGCCGAGGTGGCCAtt > 6:213330/1‑145 (MQ=255) accaccGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAGTGTCCGGCCGAGGTGGCCATTACct > 1:1718/1‑149 (MQ=255) taccGGTACCACGGTGCCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAGTGTCCGGCCGAGGTGGCCATTACctgc > 8:10004/2‑149 (MQ=255) caccGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGaaa > 7:65655/1‑100 (MQ=255) caccGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGaaa < 8:65655/100‑1 (MQ=255) caccGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGACGATGAAGTGTCCGGCCGAGGTGGCCATTACctgc > 8:111023/1‑149 (MQ=255) accGGTACCACGGTGCCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGa < 7:94064/83‑1 (MQ=255) accGGTACCACGGTGCCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGa > 8:94064/1‑83 (MQ=255) cGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAGTGTCCGGCCGAGGTGGCCATTACCTGCTgg < 3:80054/149‑1 (MQ=255) | CAATTACCCCAACGCCCACCTCGGCGTGCGCGTGAAGTACGACCTGTCACCTGCCTGGCAGTTGCGCGTGGCGGCGTTCAACGTCGACCCCGAAAGCAACGGCAACTCCAGCCGCGCCTGGCACCTGGGGCCCAAGCACACCACCGGCACCGTGGTACCGGTAGAACTGGTATACAAGCTGCAGGGTGAACTGCCAGGCGAGTACAAGCTTGGTTACTACTACGACAGCTCTGATGTGAAACGCATCGGCAGCGATGATGAAGTGTCCGGCCGAGGTGGCCATTACCTGCTGG > NC_002947/4050528‑4050820 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |