| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 278,744 | +A | intergenic (‑239/+75) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 278,742 | 1 | . | A | 78.8% | 82.7 / 19.5 | 33 | intergenic (‑237/+77) | PP_0224/sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| Reads supporting (aligned to +/- strand): ref base . (3/4); new base A (6/20); total (9/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑A‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCG > NC_002947/278601‑278880 | cTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑A‑A‑accc > 5:166971/1‑147 (MQ=255) aGCTGAGCGCGACAGACGTGTGCTGGGCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGc < 2:141340/146‑1 (MQ=255) tCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTacac < 5:31973/148‑1 (MQ=255) cgcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTacaca < 8:91206/148‑1 (MQ=255) cgcgACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTacaca < 4:131598/148‑1 (MQ=255) aGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGcc < 3:95787/148‑1 (MQ=255) tgCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGAt > 6:124946/1‑148 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGGTT‑A‑A‑ACCCCTCCGACCAACAAGCCTCAAGATCtgtgg > 1:67991/1‑147 (MQ=255) tccggtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCtgt < 4:64556/146‑1 (MQ=255) gtggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTg < 6:126492/148‑1 (MQ=255) ggtccggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTa < 6:166971/148‑1 (MQ=255) ggtATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATCTTTATAGACGGGGGATTTGTTACAGAGGGGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGc < 8:107702/148‑1 (MQ=39) tatatataCCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGCTGAGTTGTTACAGAGGTGCCGGGCTCTTCTC‑GGGAA‑A‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCgg < 6:136218/148‑1 (MQ=255) tataCCCTAATGATTTATAAAATTTTTATTAACTAACTTTTTGGAATATTTATAGAAGGGCGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGttt < 3:15974/148‑1 (MQ=255) ccTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTAccc < 5:73343/147‑1 (MQ=255) gATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAg > 6:87338/1‑148 (MQ=255) ttATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTAACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCGCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGc < 4:45554/148‑1 (MQ=255) tataAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGCGGGG‑A‑A‑A‑CCCCCTCCGACCCCCATGGCGCAACATATGTGGACGGTAGGGGCGGGTTTTCCCGCCAAAGGGcc > 1:66550/1‑148 (MQ=255) taAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCt > 2:87481/1‑87 (MQ=255) aaaaTTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTc < 1:87481/87‑1 (MQ=255) aactaactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTc > 6:87496/1‑148 (MQ=255) tatctTTTTGTATTTTTTATAGACGGGGTATTTGTTACTGCGGGGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGGTCCTACAAAAATGCCTCATTATCTGTCAACTGTAGGAGGGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 8:141638/145‑1 (MQ=255) taactTTTTGTAATATTTTTTGATGGGGTTTTTGTTACTGAGGTGCCGGGGGCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACTTGCCTCAAGATCTGTGCACTGTAGTAGGGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 4:71464/148‑1 (MQ=255) taactTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTCCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGa < 6:41522/148‑1 (MQ=255) tttttGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGGAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACCGGTTTACTCGGCGGcc > 6:61585/1‑148 (MQ=255) tttttGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTACTAACCACATGCCTCAAGAGCTGTGCAATGTATGCGCCGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGcc > 2:45780/1‑148 (MQ=255) atTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCAGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGa < 6:66488/148‑1 (MQ=255) aGGGGGATTTGTTCCAGCGGGGCCGGGCTCTTCGC‑GGG‑T‑ACA‑CCCGCGCCTCCACACATGCCGCAAGATCTGGGCACTGTAGCAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgc < 7:123868/148‑1 (MQ=255) aGGGGCATTTGTCCCAGCGGGGCCGGGCTCTGCGC‑GGG‑T‑ACC‑CCCGCGCCAACCCACCGCCCGCACGCTCGGCCCACTGTCGCCGCGGGTTTCCCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGGCCCGAGGAACTTgc < 3:133516/148‑1 (MQ=255) ggggTTTTGTTACTGCGGGGCGGGGCTGTTCGC‑GGT‑A‑A‑ACCCCGCTCATACCCACATGCCTCATTTTGTGTGCACTTTTGGCGGGGTTTAACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTgcgc < 2:67991/148‑1 (MQ=255) agagtggCCGGGCTCTTCGG‑GGT‑TAA‑A‑CCCGCTCCTACACACAGTCATCAAGATCTGTGCACTGAAGGAGCGGTTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCcgc < 2:59594/141‑1 (MQ=255) gctTCGC‑GGG‑TAA‑A‑CCCGCTCCTACACACATGCCTCAATATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTcttcctt < 2:52281/147‑1 (MQ=255) ttCGC‑GGG‑TAA‑A‑CCGGCTCCTACACACATGCCTCACGATCGGTGCACTGTAGGCGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCg < 5:40827/148‑1 (MQ=39) | CTACAGCTGATCGCGACAGACGTGTGCTGGTCCGGTGGTCCGGTATATATACCCTAATGATTTATAAAATTTTTATGAACTAACTTTTTGGAATATTTATAGAAGGGGGATTTGTTACAGAGGTGCCGGGCTCTTCGC‑GGG‑T‑A‑A‑CCCGCTCCTACACACATGCCTCAAGATCTGTGCACTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGAACAGGTTTACTCGGAGGCCGCAGTCCCGAGGAACTTGCGCAAGAACTGCCGCGTACGCTCTTCCTTCG > NC_002947/278601‑278880 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |