Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	1,419,549	+C	intergenic (‑38/+98)	PP_1242 ← / ← PP_1244	hypothetical protein/hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,419,548	1	.	C	100.0%	69.6 / NA	21	intergenic (‑37/+99)	PP_1242/PP_1244	hypothetical protein/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base C (7/14);  total (7/14)

AGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTG  >  NC_002947/1419406‑1419669                                                                                                                                                |                                                                                                                          aGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGggctgg‑cctct                                                                                                                      <  7:57562/148‑5 (MQ=255)                  aTGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCt                                                                                                      <  2:83965/148‑1 (MQ=255)                    gCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCGTGCCCGcgaa                                                                                                    <  4:160708/148‑4 (MQ=255)                      ggAACTGCGGGTGAGTGTTGTTTTCGCCTTGGTAGACGCAGGTCTTGCCGACTGTGGTGGGTGCTGTTGTGTGGTCGGTGGGCATTGTTTTGTTTCCCTTGATTCTGGGGTGCCTGGGCTGGCCTCTTCGCGGGCGTGCCCGcgaag                                                                                                   <  4:101842/147‑5 (MQ=255)                      ggAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGGTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTccc                                                                                                   <  4:136690/147‑1 (MQ=255)                       gAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCcac                                                                                                 <  8:23661/148‑1 (MQ=255)                         aCAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAg                                                                                               <  5:112289/148‑1 (MQ=255)                                 tGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGACTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACtgtg                                                                                       <  1:25891/148‑1 (MQ=255)                                                   tGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCtgtg                                                                     <  3:104978/148‑1 (MQ=255)                                                       aGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGa                                                                 <  3:69776/148‑1 (MQ=255)                                                        gAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACt                                                                                          >  4:6889/1‑122 (MQ=255)                                                         aaGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACtg                                                                                         <  3:6889/122‑1 (MQ=255)                                                         aaGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGGGCCGGCTGTGGTGAcc                                                               >  5:53497/1‑148 (MQ=255)                                                              ggTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCtgtg                                                          <  2:48306/148‑1 (MQ=255)                                                                          tgtgGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGAGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTg                                              >  6:49348/1‑148 (MQ=255)                                                                                         tgtgttgtCGGTGGGCATTGTTTTGTTGCCCTGGATTCTGGGTGGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCt                               <  2:120485/148‑1 (MQ=255)                                                                                         tgtggtggCGGGGGGCATTGTTTTGTTTCCCTGGATGCTGGGTGCCCTGGGCTGGCCGCTTCGCGGGCACGCCCGCGCCCACAGGTACTGTGCAGTGCGTGACGGCTGGGGGGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGc                                 <  2:15470/146‑1 (MQ=25)                                                                                                         aTTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTTCTGTGGAGTGCGTGACGGCTGTGGTGACCCGGTGGGAGCGGGCGTGCCCGCGAAGAGGCCGGACCTGCTTATGCAAg               >  5:59757/1‑148 (MQ=37)                                                                                                             ttttgtttCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCCCGCCCCCTCCCCCAGGTCATGTGCAGTGCGGGACGGGTGTGGGGCCCCTGGGGGCGCGGGCGTGCCCGCGCACAGGCCTGACCTGCGAATGCAAggggg           >  7:9467/1‑145 (MQ=255)                                                                                                             ttttgtttCCCTGGATTCTGGGTTGCCTGGGCTGGCCTCTTCGCGGGCACCCCCCCAACCACACGTTCTGTGCACTGCGGTACGGCTGTGGTGACCCAGGGGGAGCGCGCCTGGCCGCGAAGAGGCCATACCAGCGAATTGAACgtgt           >  8:4708/1‑148 (MQ=255)                                                                                                              tgggttgCCGTGGATTGGGGGTGGCCGGGGCGGGCCGCTGCGCGGGCACGCCCGCCCCCACCGGTACGGTGCCGGGCGTGACGGCTGGGGGGACCCTGGGGGCGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGtgtg          <  7:77013/145‑1 (MQ=255)                                                                                                                      ccTGGATTCTGGGTTGCCTGGGCTGGCCTCATCGCGGGCACCCCCGCTCCCACACGTAAAGTGCAGTTCGTTGCGGGTAGTGTTTCCCTGTGGGAGCGGGCGTTCCCGCCGAGAGGCCTGAACTGCTAAAGCAAGGTGTGAGGcggcg  >  6:186/1‑144 (MQ=255)                                                                                                                                                |                                                                                                                          AGGGGATGCCGGGTTCGATGCGGAACAGCGGGTGAGTGTTGTTTTCGCCTTGGTAGAAGCAGGTCTTGCCGACTGTGGTGGGTTCTGTTGTGTTGTCGGTGGGCATTGTTTTGTTTCCCTGGATTCTGGGTTGCCTGGGCTGG‑CTCTTCGCGGGCACGCCCGCTCCCACAGGTACTGTGCAGTGCGTGACGGCTGTGGTGACCCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCTGACCTGCTAATGCAAGGTGTGAGGCTCTG  >  NC_002947/1419406‑1419669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑