New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2301454	0 (0.000)	22 (0.710)	21/286	0.6	100%	intergenic (‑98/‑233)	sbcD/PP_5497	exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein
	?	NC_002947	5545321 =	NA (NA)					intergenic (‑461/+416)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB

GCCGTGCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2301306‑2301454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT  >  NC_002947/5545321‑5545467                                                                                                                                                                                                                                                                                                           GCCGTGCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGC                                                                                                                                                      >  4:133559/1‑148            TTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAA                                                                                                                                            >  7:125057/1‑147            TTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAA                                                                                                                                            >  7:117306/1‑147                  CCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAG                                                                                                                                      >  3:82602/1‑147                   CAGGTGTCAGTCGGAGGTCTGAAACAGACGGATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCTGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGAT                                                                                                                                    <  1:100613/148‑1                     GGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAA                                                                                                                                  <  3:112679/148‑1                               GGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCCGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATAGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTC                                                                                                                        >  1:110616/1‑148                                     ATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGGCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCga                                                                                                                  >  8:161835/1‑146                                      TGAAACAGACGCATGTATGACCTGTTGGTGTCCACTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAG                                                                                                                 >  3:75830/1‑148                                         AACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCAAGCG                                                                                                               >  3:26736/1‑147                                                 CATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACA                                                                                                      <  6:97606/148‑1                                                    GGATGACCTGTTGGTGTGGAGTCGGGCAAGCGGGGAAAGGGCTGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGC                                                                                                   <  6:42467/148‑1                                                            TGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGG                                                                                           <  1:161283/148‑1                                                                  TGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATG                                                                                     <  1:70329/148‑1                                                                             GCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTG                                                                          >  3:103408/1‑148                                                                               AAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGTGGGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGT                                                                         >  2:61194/1‑148                                                                                     GGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTGCCTCT                                                                  >  8:141791/1‑148                                                                                                TATGGTAACCCAAGCGT‑GGGTCCGCTGTGCGTCCCGATCTCTTGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGG                                                       <  3:112014/148‑1                                                                                                         CCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCCGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAA                                              >  7:40890/1‑148                                                                                                         CCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAA                                              <  3:31627/148‑1                                                                                                           AAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGC                                            >  8:121990/1‑148                                                                                                                          TGTGCGGCCCGATCGCGGGCAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGA                              <  6:122351/148‑1                                                                                                                                             CAAGCCAGCTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGA‑TAACGCCGATGCCATTTGG          <  2:45149/148‑1                                                                                                                                                     CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTC   <  1:178895/148‑1                                                                                                                                                     CTTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGACACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTC   >  7:68581/1‑148                                                                                                                                                      TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATGCGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT  >  1:121353/1‑148                                                                                                                                                      TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT  >  2:10228/1‑148                                                                                                                                                      TTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT  >  6:99314/1‑148                                                                                                                                                                                                                                                                                                           GCCGTGCAGGCTTTGGCCCAGGTGCCAGTCGGAGGTATGAAACAGACGCATGGATGACCTGTTGGTGTCGAGTCGGGCAAGCGGGGAAAGGGCGGTATGGTAACCCAAGCGT‑GGGGCCGCTGTGCGGCCCGATCGCGGGCAAGCCAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2301306‑2301454 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctTCTATCAAACAAAAGATAACCCACTGTTCTTTCTAGCGAAAAAAACAGGCGCGCGGGGTCAATGGCGGCGAAGTGTTCACTCTTCTATACGTGGTCACAGCAAGCTGTGCCGACAGGGATTAACGCCGATGCCATTTGGGCCACTCT  >  NC_002947/5545321‑5545467

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.