Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_002947 | 4,740,819 | 2 bp→CT | intergenic (+56/+696) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,740,819 | 0 | T | C | 95.7% | 63.0 / NA | 23 | intergenic (+56/+697) | gltA/yeiW | citrate synthase/putative oxidoreductase |
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (12/10); minor base G (0/1); total (12/11) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.78e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
* | NC_002947 | 4,740,820 | 0 | G | T | 100.0% | 73.5 / NA | 23 | intergenic (+57/+696) | gltA/yeiW | citrate synthase/putative oxidoreductase |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (12/11); total (12/11) |
AGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGCCTT‑GCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGCCA > NC_002947/4740680‑4740951 || aGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCg < 2:28100/146‑1 (MQ=255) gTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCtt > 7:96342/1‑148 (MQ=255) aaGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTcgcg > 7:33352/1‑148 (MQ=255) gcgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTT‑GCCCGCGaa < 1:90736/148‑1 (MQ=255) cgcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGGCAA‑GGCCGCGAag < 4:780/148‑1 (MQ=255) gcCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGACAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCGCTTCGCGGGCAA‑GGCCGCGAaga < 7:80693/148‑1 (MQ=255) gcgcGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCCGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCGT‑GCCCGCGAAGAGGCCGGCACAGCCACCACAACAccg > 5:99389/1‑147 (MQ=255) cgACATCGGTGCCCGGAAACCCCGCAAGTAAGCTACAGTCGCCGAACGCAAGACGGCTGCCCGCGGGCAGCC‑TTTTTTATTTGCCCTGGGCCGGCCGCTTCGCGGCCTT‑GCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAg < 3:139876/148‑1 (MQ=255) gACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTT‑GCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGt > 8:5907/1‑148 (MQ=255) tGCCCTGAAAGACGGCATTTAAGCTGAATTAGCCTATCGCATTATGGCTGCCGTCGGTCAGCC‑TTTTTTATTTGGCGTGTGCCGGCGTCTTCG‑GGCCTTGGCCCGCTAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTcc < 4:103686/148‑1 (MQ=255) ccTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTT‑GCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTccgcc > 6:61834/1‑148 (MQ=255) cTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTT‑GCCCGCGAAGAGGCCGGCACAGCCACCACAAAACCGAAGTTTTTATccgccc > 6:51988/1‑148 (MQ=255) ccGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTACCGGCCTCTTCGCGGCCTT‑GCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCAc > 4:107837/1‑146 (MQ=255) cAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTT‑GCCCGCGAAGAGGCCGGCACAGACACAACAAAACCTCAGGTTTTATACGCCCGCTCACGCAGc > 8:115298/1‑148 (MQ=255) cTGCAGTCGCCGAACGCACGACGGCGGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGGGCCGGCCGCTGCGCGGCCTG‑GCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAg < 3:165913/148‑1 (MQ=255) tGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTT‑GCCCGCGCAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCCCGCAGCCCTGTCAgg > 5:70376/1‑148 (MQ=255) gCAAGAAGGCTGCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCCGCCTT‑GCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGgcg > 2:25280/1‑147 (MQ=255) catgaagGCTGCCCTCGGGCAG‑CATTTTTTATTTGTCCTGTCGCGGCGTATTCGGGGCCTG‑GCCCGCGATGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCa < 7:115298/145‑1 (MQ=255) gcggCCCTCGGGCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTG‑GCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATccacca < 3:126067/145‑1 (MQ=255) ggCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCGTT‑GCCCGCTAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACttgtt < 3:163751/148‑1 (MQ=255) gCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTT‑GCCCGCTAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACttgttg < 6:33891/148‑1 (MQ=255) gCAGCC‑TTTTTTATTTGTCCTGTGCCGGCCTCTTCGCGGCCTT‑GCCCGCGAAGAGGCCGGCCCAGACACCCCAAAACCTCAGGTTTTCTACGCCCGCTCACGCACCCCGTTCAGGGTTTTGAACGGCGCATCCACCCCGAACgtgttg > 3:115833/1‑148 (MQ=255) ccttttttATTTGTCCTGTGCCGGCCTCTTCGCGGCCTT‑GCCCGCGAAGAGGCCGGCACAGACACCACAAACCCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGccc > 8:117469/3‑147 (MQ=255) || AGCCCGTACAAGATCGGCCGTCCGCGCCAGCTGTACACCGGCGAGCAGAAGCGCGACATCGTTGCCCTGAAAGACCGCAAGTAAGCTGCAGTAGCCGAACGCAAGAAGGCTGCCCTCGGGCAGCCTTTTTTTATTTTTCTGGTGCCGGCCTCTTCGCGGCCTT‑GCCCGCGAAGAGGCCGGCACAGACACCACAAAACCTCAGTTTTTCTCCGCCCGCTCACGCAGCCCTTTCAGGGTATTGAACGGCGCATCCACCACGAACTTGTTGGCCA > NC_002947/4740680‑4740951 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |