New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 65278257 (0.780)13 (0.210) 11/242 6.0 34.3% coding (1961/1962 nt) ctpL methyl‑accepting chemotaxis protein CtpL
?NC_002947 = 4808159 1 (0.020)intergenic (‑268/‑287) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
Rejected: Coverage evenness skew score above cutoff.

ACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCG  >  NC_002947/4808011‑4808198
                                                                                                                                                    |                                       
aCAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGTGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTgg                                         <  4:207895/149‑1 (MQ=255)
        tCGCGGTGTGTATAGGGCAATGGGCGGAATTAGAGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGCGGATTTTCAGCGACTGGGAGGTCTACGCCGGGAGAGTTTCAGCGCCTGGtagaacca                                 >  1:153806/1‑145 (MQ=38)
          gcgGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTAGGCCGGGGGAGTTTCAGCGGCTGGGAGGTGTTCGCCCGGAGTGTTTCAGCTCCTCGGAGATCGacc                               >  5:230933/1‑147 (MQ=255)
                     aGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGAGTTTCAGCGCCTGGGAGCTCGTCGCCGGGAGAGTTTGCGCGCCGGGgagagaga                                 >  7:223928/1‑132 (MQ=25)
                          aaTGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGAGTTTCAGCGCCTGGGAGTTGTACGCAGGGACAGTTTCAGCGACTGGGATATAGAGCGCCGCACGCGAGgcgc               >  8:131812/1‑149 (MQ=25)
                                 ggAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCTTCgcgg        <  5:337422/149‑1 (MQ=255)
                                        gcgcTTTGGCTGTTTTGTTTTTGGCGGGAGGAGTTGAGGGCCTGGTAGGCCTTGGCCGGTTGTCCTTCAGCGCCTGGGAGTTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCTCCGCCCGCGCGGCGCTTCgcgggtaaac  <  5:168254/148‑6 (MQ=12)
                                                                                                                           ttCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCttcgcg         >  1:391574/1‑58 (MQ=11)
                                                                                                                           ttCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGCGGCGCttcgcg         <  2:391574/58‑1 (MQ=11)
                                                                                                                                                    |                                       
ACAATGTGTCGCGGTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCG  >  NC_002947/4808011‑4808198

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.