| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2301453 = | 0 (0.000) | 96 (1.340) | 60/276 | 0.2 | 100% | intergenic (‑97/‑234) | sbcD/PP_5497 | exonuclease subunit SbcD/rhs repeat‑associated core domain‑containing protein |
| ? | NC_002947 | 2925429 = | NA (NA) | intergenic (‑177/+388) | PP_2563/PP_2564 | antibiotic biosynthesis protein/quercetin 2,3‑dioxygenase | |||||
TGGTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCC > NC_002947/2925288‑2925570 | tggTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCAcc > 1:114777/1‑147 (MQ=255) gTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCGAACGGGTTAGCGGTTGTTCCATGGGAGATCAccc < 1:273699/147‑1 (MQ=255) gTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCa < 2:415055/147‑1 (MQ=255) acaACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCACATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTc > 5:404672/1‑149 (MQ=255) aaCGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGcccggaag < 5:412758/149‑6 (MQ=255) aaCGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCCATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCg > 1:105464/1‑149 (MQ=255) aCGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCgg < 6:223651/149‑1 (MQ=255) cTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCt < 7:81437/149‑1 (MQ=255) tAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCCCCCAGCCCTTCCGGGCTg > 2:418480/1‑149 (MQ=255) tAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTg > 3:70345/1‑149 (MQ=255) gTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTgc < 6:311569/148‑1 (MQ=255) aGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGt < 3:192351/149‑1 (MQ=255) ggctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGca > 7:408478/1‑148 (MQ=255) gctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGcaca < 6:14200/149‑1 (MQ=255) gctgATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGca > 7:117082/1‑147 (MQ=255) ggCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGc > 3:130838/1‑145 (MQ=255) ggCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGc < 4:130838/145‑1 (MQ=255) cAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCTGGCTGCGCTGTCGCACAGCAAACAGGAt < 8:117082/149‑1 (MQ=255) aaTATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCAAATCAAACAGGATg > 7:211469/1‑149 (MQ=255) ttGAAGGCAGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCTAGCGTGCCCCCATAAAACCCTGCTAACACG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCAt > 5:307920/1‑149 (MQ=255) gAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTGGCGGTTGTTCCATGGGAGATCACCCCGCCCTGCCGGCCTGCGCGGACGCACAGCAAACAGGATGCGCATGa > 8:159455/1‑149 (MQ=38) ccTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGt > 5:240170/1‑144 (MQ=255) cTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATc > 6:385851/1‑149 (MQ=255) cGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGCCGTCAGagatgcc > 6:296767/1‑143 (MQ=255) cGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCa < 5:385851/149‑1 (MQ=255) cAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATc > 6:92121/1‑146 (MQ=255) gggCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGTTTGTTCCATGGGAGATCACCCAGCCATTCCTGGCTGCGCTGTCGCACAGCAAACAGTATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGaa < 5:296767/149‑1 (MQ=255) aGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTc < 2:179035/149‑1 (MQ=255) cGTGCCCCCATAAAACCCTGCTAACCCG‑ACGTGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGc < 6:307920/149‑1 (MQ=255) cGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCga < 5:145448/130‑1 (MQ=255) cGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCga > 6:145448/1‑130 (MQ=255) gTGCCCCCATAAAACCCTGCTAACCCG‑ACTGGTTAGCGGTTGTTCAATGGGATATCACCCAGCCCTTCCGTGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGc < 6:404672/148‑1 (MQ=255) ccATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGa > 1:371440/1‑149 (MQ=255) aaaCCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCgg < 4:70345/149‑1 (MQ=255) ccTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAg < 6:356789/149‑1 (MQ=255) accgCTAACCCG‑TCGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACCTCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAg > 8:177954/4‑149 (MQ=255) tGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGAAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGt > 5:298040/1‑149 (MQ=255) cTACCCCG‑ACTCGTTAGCGCTTGTTCCATGGGAGAGCCCCCACCCCTTCCGCGCTGCGCTGACGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACAGCGACCTCTAGAAAAGCATTCGCCGACCGATCCGGGTAGGt < 8:80408/147‑1 (MQ=14) aCCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAgcc > 6:225863/1‑149 (MQ=255) aCCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAgc < 6:240170/148‑1 (MQ=255) ccG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAgccgc > 3:356232/1‑149 (MQ=255) gggTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGaa > 2:269612/1‑148 (MQ=255) aGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACtt < 8:408478/148‑1 (MQ=40) gCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACttt < 5:92121/148‑1 (MQ=40) gttgttCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTa > 5:268219/1‑149 (MQ=38) gttgttCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTa > 2:244595/1‑149 (MQ=38) gttgttCCATGGGAGATAACCCAGCCCTTCCGGGATGAGCTGTCGCAGAGCAAACAGGATGAGCATGACGTCAGATGTGCACTGACATCGAGATCTAGAAAAGCATTAGACGACTGATCAGGGTAGGTCTGCCGCCGATTACTTTGCTa > 5:67207/1‑149 (MQ=11) gatgttCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGCATGCGCAGGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTa < 7:159455/147‑1 (MQ=255) tCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAgcc < 2:111324/128‑1 (MQ=35) tCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAgcc > 1:111324/1‑128 (MQ=35) tCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTg < 2:388278/141‑1 (MQ=34) tCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTg > 1:388278/1‑141 (MQ=34) cATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTcc > 7:109636/1‑149 (MQ=32) tGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTccc > 5:333240/1‑148 (MQ=31) | TGGTAGCACAACGCTAGTGCAGGCTGGCTGATGGCGCCAATATTTGAAGGCTGCCTTGCGATAGCCGGGCAGGTCCAGGGCCGCAAGCGTGCCCCCATAAAACCCTGCTAACCCG‑ACGGGTTAGCGGTTGTTCCATGGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCACAGCAAACAGGATGCGCATGACGTCAGATCTGCACTGACATCGAGATCTAGAAAAGCATTCGCCGACTGATCCGGGTAGGTCAGCCGCCGAATACTTTGCTATGGTTCCC > NC_002947/2925288‑2925570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |