New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 65278252 (0.780)16 (0.280) 15/240 4.2 41.2% coding (1961/1962 nt) ctpL methyl‑accepting chemotaxis protein CtpL
?NC_002947 = 4808159 1 (0.020)intergenic (‑268/‑287) PP_4234/dsbD‑II bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
Rejected: Coverage evenness skew score above cutoff.

GGCCGGGCTGGCCAGCAGTAGGAACAGCATGAAAAACAGGCGGC‑GCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/652616‑652782
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggcggcgctcgatctcCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTATACA  <  NC_002947/4808159‑4808027
                                                                                                                                                                                                                                                                                                             
GGCCGGGCTGGCCAGCAGTAGGAACAGCATGAAAAACAGGCGGCGGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGC                                                                                                                                                          >  1:81213/1‑149
  CCGGGCTGGCCAGCAGTAGGAACAGCATGAAAAACAGGCGGC‑GCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCG‑AGCGCCGCCCGc                                                                                                                                                      >  6:320463/1‑148
    GGGCTGGCCAGCAGTAGGAACAGCATGAAAAACAGGCGGC‑GCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGG                                                                                                                                                     <  6:2047/149‑1
          GCCAGCAGTAGGAACAGCATGAAAAACAGGCGGC‑GCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGTGGCGC                                                                                                                                               >  6:55994/1‑149
             AGCAGTAGGAACAGCATGAAAAACAGGCGGC‑GCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCCCGCGCGGCGCTtc                                                                                                                                            <  1:51883/149‑3
               CAGTAGGAACAGCATGAAAAACAGGCGGC‑GCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGAT                                                                                                                                          <  3:113669/149‑1
               CAGTAGGAACAGCATGAAAAACAGGCGGC‑GCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGCATGCGCAGGAATAATTGGCCCGACACAAACGTAGGAGCGGCTTTACCAGCGAAGCGCCGCGCGGGCGGAGGTCGAT                                                                                                                                          >  3:373880/1‑149
               CAGTAGGAACAGCAGGAAAAACAGGCGGC‑GCATGGCGGACTCGCGAGGGGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCCCGCGCGGCGCTtcgc                                                                                                                                          <  4:174108/149‑5
                 GTAGGAACAGCATGAAAAACAGGCGGC‑GCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCT                                                                                                                                        >  8:259033/1‑149
                                                                                           cCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACACGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGC                                                               <  7:313360/148‑1
                                                                                              CAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACAC                                                                                                          >  4:93576/1‑103
                                                                                              CAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACAC                                                                                                          <  3:93576/103‑1
                                                                                                  AATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGACAAACACCCGCCGAACACCTACAAGGCGCTGAACAC                                                        >  7:140761/1‑149
                                                                                                       actggCCGAAACAATCGTAGGATCGGGTTTACCCGCGAAGCTCCGAGCGTGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAATATATCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCC                                                   <  5:272043/144‑1
                                                                                                       TTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCC                                                   >  5:137442/1‑149
                                                                                                            CCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGC                                                                                                 <  4:341450/98‑1
                                                                                                            CCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGG                                                                                                                                                      <  6:38329/45‑1
                                                                                                            CCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGG                                                                                                                                                      >  5:38329/1‑45
                                                                                                              GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCAAGGCACTGAAAGCCTACCGCaacag                                            >  8:340621/1‑144
                                                                                                                       GTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAAC                                                                            <  6:300491/108‑1
                                                                                                                       GTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAAC                                                                            >  5:300491/1‑108
                                                                                                                                 tTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGAACTCCCACGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTG‑AAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGA                        <  5:51623/148‑1
                                                                                                                                 GTTTACCAGCGAAGCGCCTCTCGTGCGTCGCTCGATATCCCAGTCGATGAAACTCTCCCGGCGAACACATCCCAGTCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGC                          <  7:178378/148‑1
                                                                                                                                     acaCGCGAAGCGCCGCGCGTGCGGCGCTCGATCTCCGAGCCGCTGAAACTGTCCCGGCGTACACCTCCCAGGCGCTGAAAATCGCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAAT                      <  4:132149/145‑1
                                                                                                                                        gatcgAGCGCCGCCCGCGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAAC                                                        >  2:14988/6‑111
                                                                                                                                        gatcgAGCGCCGCCCGCGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAAC                                                        <  1:14988/106‑1
                                                                                                                                             AGCGCCGCCCGCGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCAT             >  1:396385/1‑149
                                                                                                                                                        tGCGGCGCTCGATCTCCCCGGCGCACCAACTCTCCCGGCGTACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTATACA  <  6:111025/148‑1
                                                                                                                                                              GCTCGATATCCCAGGCGCTGAAACTCTCCCGGCGAAGACCTCCGAGGCGCGGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCC         <  5:133384/136‑1
                                                                                                                                                                                                                                                                                                             
GGCCGGGCTGGCCAGCAGTAGGAACAGCATGAAAAACAGGCGGC‑GCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/652616‑652782
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggcggcgctcgatctcCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCCCATTGCCCTATACA  <  NC_002947/4808159‑4808027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.