| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_002947 | 5,555,608 | +GCC | intergenic (‑84/+87) | PP_4887 ← / ← PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5555608 | 4 (0.060) | 42 (0.640) +GCC |
28/274 | 2.3 | 91.5% | intergenic (‑84/+87) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5555609 = | 4 (0.060) | intergenic (‑85/+86) | PP_4887/PP_4888 | hypothetical protein/methyl‑accepting chemotaxis transducer | |||||
CGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCG‑‑‑C‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCA > NC_002947/5555461‑5555738 | cGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGCCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑gcg < 1:220549/148‑1 (MQ=255) tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccc > 7:278052‑M1/1‑145 (MQ=255) tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccc > 8:26032‑M1/1‑145 (MQ=255) tGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgcc > 1:175210‑M1/1‑145 (MQ=255) tCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgcc < 2:175210‑M1/146‑4 (MQ=255) aCTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccctttc > 6:96295‑M1/1‑141 (MQ=255) tgCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccctttcgc < 5:96295‑M1/147‑11 (MQ=255) cAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttc > 5:213182‑M1/1‑135 (MQ=255) ttCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtg > 2:18941‑M1/1‑128 (MQ=255) aGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatg < 1:18941‑M1/149‑25 (MQ=255) ggCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctg > 6:358401‑M1/1‑114 (MQ=255) gctgCGATTTGTCGGGCGGACTTGAGCAACTGCTTTTGTCATGTGTCGCCGACAGGATAGCAACACCGCTCAGGTGTGGGAGCGGACTTTTTTCGCGAAAGGGCCGCATA‑‑‑GCGGC‑CGCGGCATTTTCGGCGTGTATg < 2:105896/134‑1 (MQ=255) gCAGCGATTAGTCGGGCGGACATGAGCAACACCTATTGTCATGTGTCGCCGACAGAATAGCAACACCGCTCAGGTGTCGGAGCGGCCTTGTGTCGCGAAACGTCCGCATA‑‑‑GCGGC‑CACGGCAATTTCCGCGTGTATg > 1:105896/1‑137 (MQ=37) cAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggg > 6:153145‑M1/1‑112 (MQ=255) cGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgca < 3:363648‑M1/149‑49 (MQ=255) gggCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTTTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaaattgcgcgtgtatgcaacaaacctggggctgcgatgccg > 4:34555‑M1/1‑100 (MQ=255) gggCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcag > 8:351738‑M1/1‑100 (MQ=255) gggCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgca < 7:35073‑M1/148‑49 (MQ=255) gACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAATGGCCGCATA‑‑‑GCGgccccggcaatttacgcgtgtatgcaacaaacctggggctgctatgcagcccg > 3:308508‑M1/1‑95 (MQ=255) gACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgcatagcagcccca < 6:213182‑M1/149‑55 (MQ=255) tGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgc < 5:358401‑M1/149‑59 (MQ=255) tGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgc < 8:278052‑M1/149‑59 (MQ=255) gCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgac < 5:153145‑M1/149‑62 (MQ=255) cAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCGGGTGTGGGAGCGGCCTTGTGTAGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttacgcgtgtatggaacaaacctggggctgcaatgcagccctttagcgac > 8:76084‑M1/1‑87 (MQ=255) cAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgc < 3:130628‑M1/145‑59 (MQ=255) cAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgc > 4:130628‑M1/1‑87 (MQ=255) cAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgcccccgcaatttccgcgtgtattcaacaaaccaggggcggctaagcagcccattagcgaca > 6:294149‑M1/1‑87 (MQ=255) cTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCGGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaagg < 7:76084‑M1/148‑68 (MQ=255) gTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccac < 7:351738‑M1/148‑73 (MQ=255) gTCATGTGGCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccac < 3:34555‑M1/148‑73 (MQ=255) gTCATGTGCGGCCGACAGCATAGCAACACCGCTCCGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccac < 4:183782‑M1/148‑73 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGAAAGGGCCGCATA‑‑‑GCGGCCC‑CGGGAAATTTCGCGTGTTTGGCAAAAACCAGGGGCGGGGATTCAGCCCGTTAGCGCCACAAAGCCCCCCAAg > 4:51493/1‑149 (MQ=255) aTGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGCAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaa < 3:40850‑M1/148‑76 (MQ=255) gCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcg < 5:294149‑M1/149‑84 (MQ=255) gCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTAGCGAAAGGGCCCCAAATCGGCC‑‑‑C‑CCGCAAATTACGCGTGTATTCCACAAACCTGGGGCTGCTATGCCTCCCATTAGCGACACAACGCCCCCAAATGACcgcg > 8:182692/1‑149 (MQ=255) cGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgca < 2:42085‑M1/149‑86 (MQ=255) cATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgcccccgcaatttacgcgtgtatggaacaaacctggggctgctatgcagcccgttcgcggcacaaggcccccaaaggcccgcgccggctt > 1:7901‑M1/1‑58 (MQ=255) aGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgt > 4:260060‑M1/1‑55 (MQ=255) aGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgt < 3:260060‑M1/76‑22 (MQ=255) cacCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgt > 7:164647‑M1/1‑50 (MQ=255) cacCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgt < 8:164647‑M1/71‑22 (MQ=255) gAGCGGCGTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttcggcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggccgg < 4:65764‑M1/149‑116 (MQ=255) cTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcag < 5:146993‑M1/149‑123 (MQ=255) gcgAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcgcgcagctgagccg > 6:156490‑M1/1‑19 (MQ=255) agaAAGGGCCGGATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacatacctggggctgctatgcagccctttcgggacacaaggcccagtaaggaccgcgcaggcttcaggcgcggtactggcccagggtggcgcgcagctgagccgc < 2:234048‑M1/148‑132 (MQ=255) gAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcggctcagctgcgcgc > 6:129756‑M1/1‑17 (MQ=255) gAAAGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcggctcagctgcgcgc > 6:124254‑M1/1‑17 (MQ=255) aaGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcggctcagctgcgcgccag < 5:124254‑M1/149‑135 (MQ=255) aaGGGCCGCATA‑‑‑GCGgccccggcaatttccgcgtgtatgcaacaaacctggggctgctatgcagccctttcgcgacacaaggcccacaaaggaccgcgcaggcttcaggcccggaactggcccaggctggcggctcagctgcgcgccag < 5:129756‑M1/149‑135 (MQ=255) | CGCTGTCACTGTGCAGGAAATTCAGGTCGGCCTGGGCAGCGATTAGTCGGGCGGACATGAGCAACTCCTTTTGTCATGTGTCGCCGACAGCATAGCAACACCGCTCAGGTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGCATA‑‑‑GCG‑‑‑C‑CGGCAATTTCCGCGTGTATGCAACAAACCTGGGGCTGCTATGCAGCCCTTTCGCGACACAAGGCCCACAAAGGACCGCGCAGGCTTCAGGCCCGGAACTGGCCCAGGCTGGCGCGCAGCTGAGCCGCCA > NC_002947/5555461‑5555738 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |