New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 5545666NA (NA)48 (0.730) 40/274 1.0 100% intergenic (‑806/+71) rpsF/rlmB 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
?NC_002947 5621244 = 0 (0.000)coding (20/774 nt) PP_4939 hypothetical protein

GCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGAGC  >  NC_002947/5621098‑5621389
                                                                                                                                                  |                                                                                                                                                 
gCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGGGCAGATCGAACCGCCCACCACTGGTCACGACGAGCGTGCCGTCACTt                                                                                                                                                 <  6:304421‑M2/149‑2 (MQ=255)
  tttggaaccatagcaaagtattcggcgtctgagctagccggatgagtcggcgaatgcttttgtagatctctatgtcagttcagatctgacgtcatgctaatcctgtttgctgtgcgacagcgcagcccggaagtgctgggtgatctctc                                                                                                                                               <  2:246016‑M2/5‑1 (MQ=255)
             cacaGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaa                                                                                                                                    >  5:313643‑M2/1‑135 (MQ=255)
             cacaGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaa                                                                                                                                    >  6:253728‑M2/1‑135 (MQ=255)
              gcaaagtattcggcggctgacctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAgc                                                                                                                                    <  7:230471‑M2/16‑1 (MQ=255)
              gcaaagtattcggcggctgacctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAgc                                                                                                                                    <  7:236480‑M2/16‑1 (MQ=255)
              acaGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGAGCGAACCGCCAACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaa                                                                                                                                    <  8:283648‑M2/148‑15 (MQ=255)
               caaagtattcggcggctgacctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAgcg                                                                                                                                   >  8:242968‑M2/132‑148 (MQ=255)
               caaagtattcggcggctgacctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAgcg                                                                                                                                   >  2:281798‑M2/132‑148 (MQ=255)
                 aagtattcggcggctgacctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCAc                                                                                                                                >  5:244052‑M2/130‑149 (MQ=255)
                  agtattcggcggctgacctacccggatcagtcggctaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCAcc                                                                                                                               <  7:107555‑M2/21‑1 (MQ=255)
                      gtcgCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataaccca                                                                                                                           <  1:63803‑M2/149‑24 (MQ=255)
                        cggcggctgacctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGAtt                                                                                                                          <  5:299715‑M2/26‑1 (MQ=255)
                           cAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgtt                                                                                                                      >  3:211141‑M2/1‑121 (MQ=255)
                            ggctgacctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTc                                                                                                                     <  4:191486‑M2/31‑1 (MQ=255)
                                tCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttc                                                                                                                 <  7:221816‑M2/149‑34 (MQ=255)
                                gacctacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCa                                                                                                                 >  7:187518‑M2/115‑149 (MQ=255)
                                  ttCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttc                                                                                                                 <  4:376526‑M2/147‑34 (MQ=255)
                                    tacccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTAc                                                                                                             >  1:190462‑M2/111‑149 (MQ=255)
                                    cGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctag                                                                                                              >  4:176433‑M2/1‑112 (MQ=255)
                                    cGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctag                                                                                                              >  2:79649‑M2/1‑112 (MQ=255)
                                      cccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagctctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGa                                                                                                           <  5:98161‑M2/41‑1 (MQ=255)
                                      cccggatcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTAc                                                                                                             <  2:98014‑M2/39‑1 (MQ=255)
                                       tgatgaATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGTTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcga                                                                                                           <  7:279038‑M2/148‑40 (MQ=255)
                                            tcagtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCg                                                                                                     <  2:279988‑M2/47‑1 (MQ=255)
                                              tACCTCGCGAATCGGCGCGGTGTTGTAGCGAGCGAAACTCTCAAGCGTTTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagatatcccactgttctttctagcgaaaaaaaca                                                                                                   >  8:279038‑M2/1‑102 (MQ=255)
                                              agtcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGc                                                                                                   <  5:362468‑M2/49‑1 (MQ=255)
                                                tcggcgaatgcttttctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctcggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATAGGCCt                                                                                                 >  3:254935‑M2/99‑149 (MQ=255)
                                                 cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccac                                                                                                                          <  4:205003‑M2/123‑25 (MQ=255)
                                                 cTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccac                                                                                                                          >  3:205003‑M2/1‑99 (MQ=255)
                                                           ggCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggt                                                                                       >  4:242155‑M2/1‑89 (MQ=255)
                                                             cgcgGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaa                                                                                    >  3:376526‑M2/1‑87 (MQ=255)
                                                              gcgGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaat                                                                                   >  2:63803‑M2/1‑86 (MQ=255)
                                                               ctagatctcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTc                                                                                   <  2:190462‑M2/65‑1 (MQ=255)
                                                                ggTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatgg                                                                                 >  6:36651‑M2/1‑84 (MQ=255)
                                                                 gtgtTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggc                                                                                <  2:181699‑M2/149‑67 (MQ=255)
                                                                      tcgatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGt                                                                           >  2:13183‑M2/77‑149 (MQ=255)
                                                                       tAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcg                                                                            <  2:112367‑M2/147‑71 (MQ=255)
                                                                        gatgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCACCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGa                                                                         <  1:281798‑M2/75‑1 (MQ=255)
                                                                         gCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagt                                                                        >  5:52089‑M2/1‑75 (MQ=255)
                                                                          tgtcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGaaa                                                                       <  1:310437‑M2/77‑1 (MQ=255)
                                                                            tcagtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAg                                                                      <  2:106589‑M2/78‑1 (MQ=255)
                                                                              cGTAAGTCTCAAGGGTGTCGTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaactaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggc                                                                             >  4:26030‑M2/1‑70 (MQ=255)
                                                                              cGAAACACTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggc                                                                             <  3:26030‑M2/139‑70 (MQ=255)
                                                                               gtgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGcgct                                                                  >  6:126013‑M2/68‑149 (MQ=255)
                                                                                tgcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCtt                                                                 <  2:57921‑M2/83‑1 (MQ=255)
                                                                                aaaCTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcact                                                                 <  4:25329‑M2/149‑82 (MQ=255)
                                                                                aaaCTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaaca                                                                                                   <  5:373998‑M2/115‑48 (MQ=255)
                                                                                aaaCTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaaca                                                                                                   >  6:373998‑M2/1‑68 (MQ=255)
                                                                                 gcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCAt                                                                                                                <  8:334831‑M2/36‑1 (MQ=255)
                                                                                 gcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCAt                                                                                                                >  7:334831‑M2/66‑101 (MQ=255)
                                                                                 gcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCAt                                                                                                                >  7:329586‑M2/66‑101 (MQ=255)
                                                                                 gcagatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCAt                                                                                                                <  8:329586‑M2/36‑1 (MQ=255)
                                                                                    gatctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGttt                                                             <  8:187518‑M2/87‑1 (MQ=255)
                                                                                     ctcAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTAACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacagcggcgcggggtcaaaggcggcgaagtgttcactcttc                                                             <  5:374491‑M2/148‑86 (MQ=255)
                                                                                       ctgacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGtt                                                              >  2:371299‑M2/60‑145 (MQ=255)
                                                                                        aaGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaag                                                                                                                                   <  6:341055‑M2/75‑16 (MQ=255)
                                                                                        aaGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaag                                                                                                                                   >  5:341055‑M2/1‑60 (MQ=255)
                                                                                         gacgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATg                                                        >  7:3340‑M2/58‑149 (MQ=255)
                                                                                         aGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtattcactcttctatac                                                        >  2:331655‑M2/1‑59 (MQ=255)
                                                                                          acgtcatgcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTa                                                            <  1:13183‑M2/88‑1 (MQ=255)
                                                                                                 tttGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcattggcggcgaagtgttcactcttctatacgtggtca                                                 <  4:17518‑M2/148‑98 (MQ=255)
                                                                                                 gcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCg                                                                                                     <  1:1353‑M2/47‑1 (MQ=255)
                                                                                                 gcgcatcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCg                                                                                                     >  2:1353‑M2/50‑96 (MQ=255)
                                                                                                     atcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAAcc                                                                                        <  5:108581‑M2/60‑1 (MQ=255)
                                                                                                     atcctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAAcc                                                                                        >  6:108581‑M2/46‑105 (MQ=255)
                                                                                                      tcctgtttgctttgcgacagcgcagcccggaagggcttggtgatCTCTCATTTGAAAAGCGCACCGGATTCACTGCGCATTAAGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGACCAGCTTCAGAc                                           <  3:331052‑M2/105‑1 (MQ=255)
                                                                                                      gCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagc                                             <  2:110706‑M2/147‑102 (MQ=255)
                                                                                                        ctgtttgctgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACg                                          <  1:371299‑M2/106‑1 (MQ=255)
                                                                                                         gATCGAACCGCCCCAAAATGGTCACGACGTGCGTGACGTCACTtcaatcaaaaaaaacataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagct                                        >  8:247320‑M2/1‑43 (MQ=255)
                                                                                                           tCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgt                                      >  3:394‑M2/1‑41 (MQ=255)
                                                                                                             gAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtg                                     >  1:181699‑M2/1‑39 (MQ=255)
                                                                                                                tgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCg                                                                                                     >  3:100932‑M2/35‑81 (MQ=255)
                                                                                                                tgtgcgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCg                                                                                                     <  4:100932‑M2/47‑1 (MQ=255)
                                                                                                                 cGCCCACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcttgctgtgaccac                                >  8:221816‑M2/1‑35 (MQ=255)
                                                                                                                   cccACAACTGGTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaccaggcgcgcgggggcaatggcggcgacgtgttcactgttggttacctggtcacagcaagctgtgccgccag                              <  8:182096‑M2/149‑117 (MQ=255)
                                                                                                                   cccACAACTGCTCACGACGCGCGGTACGTCACTtcgatcaaacaaaagatcacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacag                              >  4:216383‑M2/1‑33 (MQ=255)
                                                                                                                    cgacagcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCa                              <  5:149405‑M2/118‑1 (MQ=255)
                                                                                                                         gcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGc                                                                     <  4:236151‑M2/79‑1 (MQ=255)
                                                                                                                         gcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGc                                                                     >  3:236151‑M2/26‑104 (MQ=255)
                                                                                                                         gcgcagcccggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGa                        <  6:244052‑M2/124‑1 (MQ=255)
                                                                                                                             gTCACTCCGAGCGTGACGTCACTtcaatcacacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgc                    >  6:374491‑M2/1‑23 (MQ=255)
                                                                                                                             gTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgt                                                                      >  1:191329‑M2/1‑23 (MQ=255)
                                                                                                                             gTCACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgt                                                                      <  2:191329‑M2/99‑77 (MQ=255)
                                                                                                                               cACGACGAGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgcc                   <  4:139043‑M2/148‑128 (MQ=255)
                                                                                                                                  ggaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCgg               <  7:242968‑M2/133‑1 (MQ=255)
                                                                                                                                  gacgaGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatg               <  4:100736‑M2/149‑132 (MQ=255)
                                                                                                                                  gacgaGCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatg               <  5:33959‑M2/149‑132 (MQ=255)
                                                                                                                                   gaagggctgggtgatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCggg              >  2:6278‑M2/16‑149 (MQ=255)
                                                                                                                                       gCGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatt          >  3:100736‑M2/1‑13 (MQ=255)
                                                                                                                                        cGTGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccattt         >  3:139043‑M2/1‑12 (MQ=255)
                                                                                                                                          tGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttgg       >  7:255802‑M2/1‑10 (MQ=255)
                                                                                                                                          tGACGTCACTtctatcaaacaaaagataacccactgttctttctagcgaaaaaaacaggcgcgcggggtcaatggcggcgaagtgttcactcttctatacgtggtcacagcaagctgtgccgacagggattaacgccgatgccatttgg       >  5:304421‑M2/1‑10 (MQ=255)
                                                                                                                                            ggtgatCTCTCATTTGAAAAGAGCACCGGATTCCCTCCGCATTACGACTATCGGCATTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCAAGCTTCAGACGCAGCCGCTGCCATGAAGACAATGtcgggtgtgcact      >  4:245669‑M2/7‑142 (MQ=255)
                                                                                                                                               gatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGAgc  >  6:358197‑M2/4‑149 (MQ=255)
                                                                                                                                               gatCTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGAgc  >  8:60398‑M2/4‑149 (MQ=255)
                                                                                                                                                  |                                                                                                                                                 
GCACAGCGGCATGCACAGCATCGTCGCCAGAGTCTTCGGTGATGAATACCTCGCGAATGGGCGCGGTGTTGTAGCGATCGAAACTCTCAAGGGTGTCTTTGAGCAGATCGAACCGCCCACAACTGGTCACGACGAGCGTGACGTCACTCTCATTTGAAAAGCGCACCGGATTCCCTCCGCATTACGACTATCGGCCTTCAACAACCCGCTCCTGGGCGTGAAAGCTCTTGTTTAGATGCCCAGCTTCAGACGCAGCCGCTGCCATGCAGACAATGGCGGGTGGGGCCTGAGC  >  NC_002947/5621098‑5621389

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.