| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 699,722 | 0 | A | G | 45.5% | 25.2 / 97.0 | 77 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (20/22); new base G (12/23); total (32/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.56e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTC > NC_002947/699577‑699804 | gTCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAATATTCGGATATGTGATAGATATAGGCt < 1:3894/149‑1 (MQ=255)gTCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACt > 2:205947/1‑148 (MQ=37)gTCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACt > 2:273147/1‑148 (MQ=37) tCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTg > 2:120426/1‑148 (MQ=37) cAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGaa < 6:107092/149‑1 (MQ=37) aGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTAAGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAac < 6:208753/149‑1 (MQ=37) ggTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACAcc < 8:348985/149‑1 (MQ=37) gTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCa < 5:70059/149‑1 (MQ=37) ttCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAg > 4:275790/1‑149 (MQ=37) tCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGt > 3:213278/1‑149 (MQ=37) gATCCCGCTTGGCTCCACCACTTTCGCCGTAGGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGttt < 5:22403/149‑1 (MQ=37) aTCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTc < 2:317731/149‑1 (MQ=37) tCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCa < 3:275790/149‑1 (MQ=37) tCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCa > 8:4505/1‑149 (MQ=37) ccGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCAct < 2:117436/149‑1 (MQ=37) ccGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCAct < 2:211795/149‑1 (MQ=37) ccGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCAc < 4:135026/148‑1 (MQ=37) gCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCActgc > 2:196537/1‑149 (MQ=37) gCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTAAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCActgc > 6:78855/1‑149 (MQ=255) gCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggt < 4:59194/148‑1 (MQ=37) cTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtgg < 3:352736/149‑1 (MQ=37) cTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCtggtg > 7:5391/1‑148 (MQ=37) tCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGa > 1:379559/1‑149 (MQ=37) tCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGa > 4:40488/1‑149 (MQ=37) caccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGAt < 5:118092/148‑1 (MQ=37) accacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCa < 4:263717/149‑1 (MQ=37) accacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCa < 5:356953/149‑1 (MQ=37) ttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCt > 2:239595/1‑147 (MQ=37) tCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTaa < 2:93777/148‑1 (MQ=37) gCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGt < 3:339311/149‑1 (MQ=37) cGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTa > 5:396340/1‑148 (MQ=37) aCGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGCCTAAGGTAAAAt > 1:86543/1‑149 (MQ=37) cGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAtt > 8:223953/1‑149 (MQ=37) gCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAttt < 7:223953/149‑1 (MQ=37) gCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAttt < 7:4505/149‑1 (MQ=37) cAGTTACTTGTCAGAACTTAGAAATGAATAATTC‑AGGTCGAATGTTGATTTCTGGCTTTTTTCAGAACTTTATTTAAAA‑ATTCGGATATTTGATATATATAGGATGAAAACAATTTTAAATGCTGGTGGaaaagg > 1:226769/1‑130 (MQ=2) cAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAgg < 2:226769/134‑1 (MQ=37) cAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGTCTAAGGTAAAATTtg < 2:86543/149‑1 (MQ=37) aGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 3:40488/149‑1 (MQ=37) aGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAGTTtgt < 6:133892/149‑1 (MQ=37) aGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 6:396340/149‑1 (MQ=37) tACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGa < 1:273147/148‑1 (MQ=35) aCTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGt > 6:194025/1‑149 (MQ=21) cTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGtt > 8:324717/1‑149 (MQ=34) cTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGt > 4:86047/1‑148 (MQ=34) ttGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAg < 2:102189/146‑1 (MQ=34) ttGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAg > 1:102189/1‑146 (MQ=34) gTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCt < 4:213278/148‑1 (MQ=21) gTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTc < 5:83068/147‑1 (MQ=34) tCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt > 2:355602/1‑140 (MQ=21) tCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTtgt < 1:355602/140‑1 (MQ=21) tCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGc > 5:154608/1‑149 (MQ=21) aaaagccaGAAATCAA‑CATTCGAGCT‑GAATGTTCATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTc > 2:221743/8‑149 (MQ=11) aGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTc > 8:296679/1‑149 (MQ=21) aaCTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTATGGCTTTTGTAAGATCTTTATTTAAAA‑ATTCGGATATGTGAGATATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAATTGTGAGTTctcctct > 7:266445/1‑147 (MQ=11) cTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGaaa < 8:82475/149‑1 (MQ=21) cTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTAAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGaaa < 5:78855/149‑1 (MQ=21) ttAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGa > 5:77507/1‑146 (MQ=34) tAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGaaa > 4:165140/1‑147 (MQ=21) aGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAaga < 6:152506/148‑1 (MQ=21) aGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAaga < 2:379559/148‑1 (MQ=21) aGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAaga < 3:161055/148‑1 (MQ=21) aGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAaga < 3:165140/148‑1 (MQ=21) aGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAaga < 3:221032/148‑1 (MQ=21) gAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAagag > 6:179681/1‑148 (MQ=34) gAAATCAA‑CATTCGAGCT‑GAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGAATGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAagag > 6:311126/1‑148 (MQ=11) aaaTGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGc > 8:88420/1‑148 (MQ=21) aaaTGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGc > 6:363723/1‑148 (MQ=34) aTGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAAc < 6:77507/149‑1 (MQ=34) aTGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAAc < 1:196537/149‑1 (MQ=34) tGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACg < 2:312104/149‑1 (MQ=21) gAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACg > 5:332372/1‑148 (MQ=21) aa‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGt < 7:296679/148‑1 (MQ=21) cTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATATATATAGACTGAACACCAGTTTCACTGCTGGTTGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc < 7:346916/149‑1 (MQ=11) cTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc < 6:326867/149‑1 (MQ=11) cTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc < 3:339378/149‑1 (MQ=11) cTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTc < 6:229430/149‑1 (MQ=11) | GTCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAA‑CATTC‑AGCTCGAATGTTGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAA‑ATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTC > NC_002947/699577‑699804 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |