| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 1,499,480 | 2 bp→AC | intergenic (+57/‑106) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,499,480 | 0 | C | A | 95.5% | 110.0 / ‑6.3 | 44 | intergenic (+57/‑107) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base A (18/24); total (19/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| * | NC_002947 | 1,499,481 | 0 | A | C | 97.7% | 126.2 / NA | 44 | intergenic (+58/‑106) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base C (19/24); total (19/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCCAC‑GGCTTTGCCGGTGT‑T‑TCGGGCA‑CG‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGC > NC_002947/1499338‑1499612 || ccGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGATCCTGAACGATGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGc < 8:323280/148‑1 (MQ=255)ccGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGCAACAGGCGCCCC‑GGTGCATGGCACC‑GGCt > 3:276411/1‑149 (MQ=255) ccGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGgt > 7:261373/1‑149 (MQ=255) cGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGt‑tcgcg < 8:11224/148‑5 (MQ=255) gACAACGCTGAAGCCCGTGATGCGTCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGATGCTTCCAAACGGTGTGAGCGGGCGTGCCCGCGAAACCGGCGCGGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGt‑tcgcgg < 8:51902/148‑6 (MQ=37) tGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGGGTGGCCCCGGAAAACGCGCCCCGGGTGCATGGACCC‑GGGTTTGCCGGGGT‑T‑GCGGGcccccccc > 5:242802/1‑142 (MQ=255) aaGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑cg‑cccgct < 7:250645/149‑5 (MQ=25) gCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTcc > 8:176930/1‑149 (MQ=25) gCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑CGCGTTGCCGGTGT‑TAGCGGGCA‑CGCCCGCTcc > 6:114406/1‑149 (MQ=25) aTGCGGCATTTCAGAGCCTTAACGAAGCCTTGGCACCACAGCAGGACTGTGGCTGCCAACCGGTGGGAGCGGGGGTGCCCGCTAAACTGGCGCCGC‑GGTGCTTGGCACG‑GGCTTTGCGGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGa < 4:276411/148‑1 (MQ=18) gCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTg < 6:298782/111‑1 (MQ=255) gCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTg > 5:298782/1‑111 (MQ=255) gCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGAtt < 3:292115/149‑1 (MQ=21) ccATTCATAGCCTTAACGACGCCTTGGCACCACAGCAGCACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACCGGCGCCGC‑GGGGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTg < 8:193668/149‑1 (MQ=18) cAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCAt < 8:261373/148‑1 (MQ=21) gCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAg < 8:113936/148‑1 (MQ=21) ccTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGGATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCC‑CGCCCGCGCCCCCCGACTGATTGCCATTAAGCg > 3:105641/1‑149 (MQ=21) aaCGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGGGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGc < 5:114406/148‑1 (MQ=21) ggCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TAGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAg > 6:301317/1‑149 (MQ=25) accacAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGa < 5:377301/149‑1 (MQ=21) cagcagGACTGAGGCTGCCAAACGGTGGGAGGGGGCGTGCCCGCTAAACAGGCGCCGC‑GGTGCATGGCACG‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCg < 7:323708/127‑1 (MQ=21) aGGCTGCGAATCGGTGGGAGCGGGCGTGCCCGCTAAACAGGCGCCGC‑GTTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt < 6:119911/147‑1 (MQ=21) aGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGtttttt < 5:301317/147‑1 (MQ=21) gCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCt < 1:9846/149‑1 (MQ=21) cAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGAGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGc < 8:115158/112‑1 (MQ=17) cAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGAGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGc > 7:115158/1‑112 (MQ=17) aaaCGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGc < 8:116249/111‑1 (MQ=17) cGTGCCCGCTAAACCGGCGCCGG‑GGGGCAT‑GCCACGGGCTTGGCGGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTc < 6:242802/149‑1 (MQ=37) cGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTc < 8:121330/149‑1 (MQ=25) gCCCGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 7:51662/1‑149 (MQ=37) cccGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCtt < 1:85324/149‑1 (MQ=37) ccGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 2:209508/1‑147 (MQ=37) ccGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 2:36904/1‑147 (MQ=37) ccGCGAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCGCGCTAACGCATCATGACTCCCt > 4:227823/1‑147 (MQ=25) cgcgAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCt > 3:27722/1‑146 (MQ=37) gcgAAACAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTATTGTTGCCTCGCTAACGAATCATGACTCCCTTAg > 7:102098/1‑148 (MQ=37) gAAACAGGCGCCGC‑GGGGCATGGCACC‑GGCTTTGCCGGTGTGC‑GCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAAc < 5:213136/149‑1 (MQ=37) aaCAGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGc > 6:80708/1‑149 (MQ=37) aGGCGCCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGGTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTAt > 5:17288/1‑149 (MQ=37) gcgcCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGAc > 7:210219/1‑95 (MQ=18) gcgcCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGAc < 8:210219/95‑1 (MQ=18) gcgcCGC‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATc > 5:22878/1‑148 (MQ=37) cgccgc‑GGTGCATGGCACC‑GGCTTTGCCGGTGT‑TCGCGGGCA‑CGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCaa < 8:51662/149‑1 (MQ=37) ccgc‑GGTGCATGGCACC‑GGGTTTGCCGGTGT‑TCGCGGGCACCC‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTGTCTAACGAATCATGACTCCCTTATAACGCTATCAAGc < 1:164392/149‑1 (MQ=37) || CCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGC‑GGTGCATGGCCAC‑GGCTTTGCCGGTGT‑T‑TCGGGCA‑CG‑CCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCTAACGAATCATGACTCCCTTAGAACGCTATCAAGC > NC_002947/1499338‑1499612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |