| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,055,946 | Δ1 bp | 6.8% | coding (381/942 nt) | gsiC ← | glutathione ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,055,946 | 0 | C | . | 6.8% | 191.4 / 6.4 | 59 | coding (381/942 nt) | gsiC | glutathione ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base C (31/24); new base . (2/2); total (33/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 | |||||||||||
AGGAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGAC > NC_002947/5055806‑5056092 | agGAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGtt < 5:59036/149‑1 (MQ=255) gAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGc > 2:166095/1‑149 (MQ=255) aCCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGcgac > 3:156166/1‑149 (MQ=255) cTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGc > 4:29350/1‑134 (MQ=255) cTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGc < 3:29350/134‑1 (MQ=255) cTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGcgacg > 6:270770/1‑148 (MQ=255) tCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGG‑CAGGCGTTGCGACGAAg > 3:77021/1‑149 (MQ=255) tCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGG‑CAGGCGTTGCGACGAAg > 3:71895/1‑149 (MQ=255) ccAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCgccgcc > 3:23828/1‑149 (MQ=255) gCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGa < 4:156166/149‑1 (MQ=255) gATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACAcc > 3:2831/1‑147 (MQ=255) gATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACAcc > 5:357023/1‑147 (MQ=255) aTCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAg < 4:175939/149‑1 (MQ=255) tCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAgg > 4:64237/1‑149 (MQ=255) aCGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAgggg < 5:270770/149‑1 (MQ=255) aCGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAgggg > 7:219871/1‑149 (MQ=255) cGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGG‑CAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCa < 4:77021/149‑1 (MQ=255) cGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGG‑CAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCa < 4:71895/149‑1 (MQ=255) aaCCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGAcc < 7:84826/149‑1 (MQ=255) ccaccGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCg > 7:272105/1‑148 (MQ=255) gAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGa < 1:284183/149‑1 (MQ=255) aaaTGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAg > 7:96202/1‑149 (MQ=255) atggatggCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGc < 3:83743/149‑1 (MQ=255) atggatggCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGc < 6:357023/149‑1 (MQ=255) aaaaCCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAacac < 8:219871/149‑1 (MQ=255) aGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACCAGGCCGATCAACACGGATg > 1:367385/1‑148 (MQ=255) tCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTc < 4:2831/149‑1 (MQ=255) gCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACCCGAGGCCGATCAACACGGATGCAAACGTCAATTGCAg > 3:144001/1‑149 (MQ=255) acGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAacac > 4:164013/1‑107 (MQ=255) acGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAacac < 3:164013/107‑1 (MQ=255) cgcgGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTa < 4:23828/149‑1 (MQ=255) gcgGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACgg > 5:143148/1‑146 (MQ=255) ggAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAAc > 4:257796/1‑148 (MQ=255) aCGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAgg < 3:257796/149‑1 (MQ=255) aCGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAgg < 8:96202/149‑1 (MQ=255) cccAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATc > 5:48730/1‑97 (MQ=255) cccAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATc < 6:48730/97‑1 (MQ=255) cccAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATAcct > 1:18944/1‑149 (MQ=255) cccAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATAcct > 7:288808/1‑149 (MQ=255) ccAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATAcctc < 1:166095/149‑1 (MQ=255) tCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTgc < 8:272105/149‑1 (MQ=255) gCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTgcagc < 6:143148/149‑1 (MQ=255) gACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTgcagca > 6:70948/1‑148 (MQ=255) gACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTgcagca > 7:263780/1‑148 (MQ=255) gACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTgcagca > 5:194266/1‑148 (MQ=255) aCAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATAcctc > 8:352715/1‑139 (MQ=255) aCAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATAcctc < 7:352715/139‑1 (MQ=255) tGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTg > 7:17960/1‑149 (MQ=255) gCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAACCGTCAATTGGCGCGGCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGc > 7:347966/1‑149 (MQ=255) cGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGcc < 3:64237/149‑1 (MQ=255) gCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATAc < 8:15006/126‑1 (MQ=255) gCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATAc > 7:15006/1‑126 (MQ=255) cccACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCt > 7:138520/1‑149 (MQ=255) ccACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTg > 6:236792/1‑149 (MQ=255) ccACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTg > 2:25953/1‑149 (MQ=255) cACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTACACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTgg > 6:124134/1‑149 (MQ=255) tAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCAt < 8:263780/149‑1 (MQ=255) gTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCAtt < 6:194266/148‑1 (MQ=255) gTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCAtt > 3:276173/1‑148 (MQ=255) gTCAGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCAtt > 4:149291/1‑148 (MQ=255) gCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGAc < 5:236792/148‑1 (MQ=255) | AGGAAACCTCCGTCGACCAAGCTTCCGATCACGGGGAACCACCGGAAATGGATGGCGAAAACCAGGAGCATCAACATGGCAGACACGAACGCGGGGAACGACAACCCAGTCAGCGACAGAATGCGGCCCACGTAGTCTGGCCAGGCGTTGCGACGAAGCGCCGCCCAGACACCAAGGGGCAGACCGAACACGAGGCCGATCAACACGGATGCAAACGTCAATTGCAGCGTCCACGGTAGAACCAGGGATACCTCCTGCAGCACAGTTCTGCCGCTGGTCATTGAGAC > NC_002947/5055806‑5056092 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |