New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 47623 = | 59 (1.000) | 4 (0.070) | 4/244 | NT | 6.7% | coding (1752/3162 nt) | czcA‑I | cation efflux system protein |
? | NC_002947 | 47677 = | 55 (0.990) | coding (1698/3162 nt) | czcA‑I | cation efflux system protein |
TGCTGGGACATCGGAACATCGCTTTCTCGGCCGCAGTAGCCTTGGTCGTGCTCAGTGGTTTGCTGGCAAGTCGTATGGGTAGCGAGTTCATCCCAAGCCTCAGTGAGGGTGACTTTGCGATGCAGGCCATGCGTGTGCCTGGAACGAGCCTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/47777‑47623 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcactGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGCACGACCAAGGCTACTGCGGCCGAGAAAGCGATGTTCCGATGTCCCAGCACCCATTGCAGAACCGGTTCATAGCGCAGTCGAGCTGTGCGCAT > NC_002947/47677‑47820 TGCTGGGACATCGGAACATCGCTTTCTCGGCCGCAGTAGCCTTGGTCGTGCTCAGTGGTTTGCTGGCAAGTCGTATGGGTAGCGAGTTCATCCCAAGCCTCAGTGAGGGTGACTTTGCGATGCAGGCCATGCGTGTGCCTGGAACGAGC > 8:193483/1‑149 CTCAGTGAGGGTGACTTTGCGATGCAGGCCATGCGTGTGCCTGGAACGAGCCTCACTGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGCACGACCAAGGCTACTGCGGCCGAGAAAGCGATGTTCCGAT > 6:101399/1‑149 TCAGTGAGGGTGACTTTGCGATGCAGGCCATGCGTGTGCCTGGAACGAGCCTCACTGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGC > 1:22322/1‑108 TCAGTGAGGGTGACTTTGCGATGCAGGCCATGCGTGTGCCTGGAACGAGCCTCACTGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGC < 2:22322/108‑1 TGCGATGCAGGCCATGCGTGTGCCTGGAACGAGCCTCACTGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGCACGACCAAGGCTACTGCGGCCGAGAAAGCGATGTTCCGATGTCCCAGCACCCATT < 5:101399/147‑1 CCTCACTGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGCACGACCAAGGCTACTGCGGCCGAGAAAGCGATGTTCCGATGTCCCAGCACCCATTGCAGAACCGGTTCATAGCGCAGTCGAGCTGTGag > 7:300196/1‑146 CCTCACTGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGCACGACCAAGGCTACTGCGGCCGAGAAAGCGATGTTCCGATGTCCCAGCACCCATTGCAGAACCGGTTCATAGCGCAGTCGAGCTGTGCG > 8:282998/1‑148 TCACTGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGCACGACCAAGGCTACTGCGGCCGAGAAAGCGATGTTCCGATGTCCCAGCACCCATTGCAGAACCGGTTCATAGCGCAGTCGAGCTGTGCGCAT > 2:370382/1‑149 TCACTGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGCACGACCAAGGCTACTGCGGCCGAGAAAGCGATGTTCCGATGTCCCAGCACCCATTGCAGAACCGGTTCATAGCGCAGTCGAGCTGTGCGCAT > 4:79488/1‑149 TCACTGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGCACGACCAAGGCTACTGCGGCCGAGAAAGCGATGTTCCGATGTCCCAGCACCCATTG > 5:31804/1‑113 TCACTGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGCACGACCAAGGCTACTGCGGCCGAGAAAGCGATGTTCCGATGTCCCAGCACCCATTG < 6:31804/113‑1 ACTGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGCACGACCAAGGCTACTGCGGCCGAGAAAGCGATGTTCCGATGTCCCACCACCCATTGCAGAACCGGTTCATAGCGCAGTCGAGCTGTGCGCAT < 1:260763/147‑1 TGCTGGGACATCGGAACATCGCTTTCTCGGCCGCAGTAGCCTTGGTCGTGCTCAGTGGTTTGCTGGCAAGTCGTATGGGTAGCGAGTTCATCCCAAGCCTCAGTGAGGGTGACTTTGCGATGCAGGCCATGCGTGTGCCTGGAACGAGCCTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/47777‑47623 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctcactGAGGCTTGGGATGAACTCGCTACCCATACGACTTGCCAGCAAACCACTGAGCACGACCAAGGCTACTGCGGCCGAGAAAGCGATGTTCCGATGTCCCAGCACCCATTGCAGAACCGGTTCATAGCGCAGTCGAGCTGTGCGCAT > NC_002947/47677‑47820 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |