New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1261918	57 (0.970)	5 (0.090)	4/252	NT	7.7%	coding (717/1116 nt)	PP_1104	AotO‑related protein
	?	NC_002947	= 1261951	64 (1.110)					coding (684/1116 nt)	PP_1104	AotO‑related protein

GGGGGCGCTGGTGCCTTCGATGACACCTGCGTGGGTCAGGAAGTCGAGGATCGCCTGGCAGTCCTTGCTGGCCAGATCATGGCTGACATCCGCCTGGCCACGCAGCTCCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1261807‑1261918 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgCTTCCCGATCCCGCTGGGCTGCTGCTCGGTCACCGTGGAGC  <  NC_002947/1261951‑1261911                                                                                                                                                           GGGGGCGCTGGTGCCTTCGATGACACCTGCGTGGGTCAGGAAGTCGAGGATCGCCTGGCAGTCCTTGCTGGCCAGATCATGGCTGACATCCGCCTGGCCACGCAGCTCCACGCTTCCCGATCCCGCTGGGCTGCTGCTCGGTCACCGTG      >  6:274527/1‑149  GGGGCGCTGGTGCCTTCGATGACACCTGCGTGGGTCAGGAAGTCGAGGATCGCCTGGCAGTCCTTGCTGGCCAGATCATGGCTGACATCCGCCTGGCCACGCAGCTCCACGCTTCCCGATCCCGCTGGGCTGCTGCTCGGTCACCGTGG     <  3:122847/149‑1  GGGGCGCTGGTGCCTTCGATGACACCTGCGTGGGTCAGGAAGTCGAGGATCGCCTGGCAGTCCTTGCTGGCCAGATCATGGCTGACATCCGCCTGGCCACGCAGCTCCACGCTTCCCGATCCCGCTGGGCTGCTGCTCGGTCACCGTGG     <  5:274527/149‑1                                                                     TGGCCAGATCATGGCTGACATCCGCCTGGCCACGCAGCTCCACGCTTCCCGATCCCGCTGGGCTGCTGCTCGGTCACCGTGGAGC  <  3:24993/85‑1                                                                     TGGCCAGATCATGGCTGACATCCGCCTGGCCACGCAGCTCCACGCTTCCCGATCCCGCTGGGCTGCTGCTCGGTCACCGTGGAGC  >  4:24993/1‑85                                                                                                                                                           GGGGGCGCTGGTGCCTTCGATGACACCTGCGTGGGTCAGGAAGTCGAGGATCGCCTGGCAGTCCTTGCTGGCCAGATCATGGCTGACATCCGCCTGGCCACGCAGCTCCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1261807‑1261918 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgCTTCCCGATCCCGCTGGGCTGCTGCTCGGTCACCGTGGAGC  <  NC_002947/1261951‑1261911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.