New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1386017 =	52 (0.880)	4 (0.070)	4/252	NT	6.7%	coding (440/1266 nt)	oprD	basic amino acid specific porin OprD
	?	NC_002947	1386097 =	61 (1.060)					coding (360/1266 nt)	oprD	basic amino acid specific porin OprD

AGGGCGGCGGCGCGGTCAAATTCCGCATCTCCGACACCGTGCTGAAAGTGGGTGACCAGTTCACCGCGCTGCCGGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1386095‑1386017 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttGGAGTAGTCATCCTGCGAACGGCCGTCGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGG  >  NC_002947/1386097‑1386226                                                                                                                                                                                                                   AGGGCGGCGGCGCGGTCAAATTCCGCATCTCCGACACCGTGCTGAAAGTGGGTGACCAGTTCACCGCGCTGCCGGTCTTGGAGTAGTCATCCTGCGAACGGCCGTCGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCG                                                              >  4:181254/1‑149       GCGGCGCGGTCAAATTCCGCATCTCCGACACCGTGCTGAAAGTGGGTGACCAGTTCACCGCGCTGCCGGTCTTGGAGTAGTCATCCTGCGAACGGCCGTCGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTC                                                         >  3:213193/1‑148                  AAATTCCGCATCTCCGACACCGTGCTGAAAGTGGGTGACCAGTTCACCGCGCTGCCGGTCTTGGAGTAGTCATCCTGCGAACGGCCGTCGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGC                                              <  4:213193/148‑1                                                              CACCGCGCTGCCGGTCTTGGAGTAGTCATCCTGCGAACGGCCGTCGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGG  <  3:181254/148‑1                                                                                                                                                                                                                   AGGGCGGCGGCGCGGTCAAATTCCGCATCTCCGACACCGTGCTGAAAGTGGGTGACCAGTTCACCGCGCTGCCGGTCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1386095‑1386017 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttGGAGTAGTCATCCTGCGAACGGCCGTCGGAACCGGTCGGGAACAGGCCGGTACCGGCACGGCCCTTGCCGCTGTCCAGTTTCAGGCCGAGCATGCCGATGGCGTCGACACCCACACCCACGGTGCCTTGG  >  NC_002947/1386097‑1386226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.