New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1499507 =	4 (0.070)	10 (0.190)	7/234	NT	22.3%	intergenic (+84/‑80)	trpS/zapE	tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein
	?	NC_002947	= 6060505	66 (1.240)					intergenic (+141/+40)	PP_5311/PP_5312	signal transduction protein/hypothetical protein

CGCACCGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1499666‑1499507 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcggGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATG  <  NC_002947/6060505‑6060359                                                                                                                                                                                                                                                                                                                     CGCACCGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTC                                                                                                                                                                <  4:156576/149‑1  GCACCGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCT                                                                                                                                                               >  6:355547/1‑149  GCACCGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCT                                                                                                                                                               <  5:355547/149‑1    ACCGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGT                                                                                                                                                             <  6:282698/149‑1    ACCGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGT                                                                                                                                                             <  3:114896/149‑1          GTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGC                                                                                                                                                       <  4:305785/149‑1                           ATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAca                                                                                                                                      >  5:177739/1‑147                           ATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAA                                                                                                                                       >  2:185477/1‑148                              GAAGACGGCGGGACGTTTCAGATCTGCTTGCTAGCGTGCTAAGGGAGTCATGATTCGTTACCGAGGCAACAAAAACCGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAcaccg                                                                                                                                   <  3:285419/149‑6                               AAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGC                                                                                                                                           <  8:74682/140‑1                               AAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGC                                                                                                                                           >  7:74682/1‑140                                                                     TAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                            <  1:185477/149‑1                                                                             TCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGC                                                                                              >  2:83163/1‑139                                                                             TCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGC                                                                                              <  1:83163/139‑1                                                                               ATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                            <  4:122633/139‑1                                                                               ATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGGGCGTGCCCGCGAAACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGG                                                                                            >  3:122633/1‑139                                                                                                                                                     CTGTGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTA            >  1:295359/1‑149                                                                                                                                                     CTGGGGGAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGTCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTA            <  2:252828/149‑1                                                                                                                                                           GAGCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCT       >  8:256259/1‑148                                                                                                                                                             GCGGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAA    <  4:265164/149‑1                                                                                                                                                               GGGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATc  >  8:193791/1‑148                                                                                                                                                                                                                                                                                                                     CGCACCGCAGTTTCCTGCGCCGCGTCATGGAAGAAGTCGGGACGTTTCAGATCTGCTTGATAGCGTTCTAAGGGAGTCATGATTCGTTAGCGAGGCAACAAAAAACGGGCCGTCACTGTAGCGATAGGCCCGCTTAATGGCAATCAGTCTGTGGGAGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1499666‑1499507 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcggGCGTGCCCGCGAAACAAGCGACGCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCAAGCCCGCTCCCACAGTCCAAAATCGCGCCAGCTGTTAGAAATTGAGCAAGACAGTTGCTCCCGCAGGCTATGTGTTAATGCTTAATG  <  NC_002947/6060505‑6060359

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.