New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2193303	69 (1.170)	4 (0.070)	4/244	NT	6.0%	intergenic (+397/‑26)	PP_1938/PP_1939	hypothetical protein/hypothetical protein
	?	NC_002947	= 2193365	59 (1.060)					coding (37/144 nt)	PP_1939	hypothetical protein

GAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTAAATCGCTGCCCTTCAGCCGCCCGGCCTTTGGGAATCGTCCTTACCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2193149‑2193303 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgcaCACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAGGTAAGGACGATTCCCAAAGGCCGGGCGGCTGAAGGGCAGCGATTTACAATGGACCCGCTGGGCCCTTCGCGGCGGAGGCCG  <  NC_002947/2193365‑2193218                                                                                                                                                                                                                                                                                                                 GAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTAAATCGCTGCCCTTCAGCCGCCCGGCCTTTGGGAATCGTCCTTA                                                                                                                                                            <  6:194728/149‑1  AGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTAAATCGCTGCCCTTCAGCCGCCCGGCCTTTGGGAATCGTCCTTAC                                                                                                                                                           >  7:311824/1‑149       GATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTAAATCGCTGCCCTTCAGCCGCCCGGCCTTTGGGAATCGTCCTTACCTGCA                                                                                                                                                      >  1:37983/1‑149                                       CGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTAAATCGCTGCCCTTCAGCCGCCCGGCCTTTGGGAATCGTCCTTACCTGCACACGCGCCACTTCAGCGATGTTGATGCGATCC                                                                                                                      >  6:344695/1‑149                                                                                   GAAGGGCCCAGCGGGTCCATTGTAAATCGCTGCCCTTCAGCCGCCCGGCCTTTGGGAATCGTCCTTACCTGCACACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAGGTAAGGACG                                                                          <  5:344695/149‑1                                                                                                                     CTTCAGCCGCCCGGCCTTTGGGAATCGTCCTTACCTGCACACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAG                                                                                   <  5:126224/106‑1                                                                                                                     CTTCAGCCGCCCGGCCTTTGGGAATCGTCCTTACCTGCACACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAG                                                                                   >  6:126224/1‑106                                                                                                                                                     ACCTGCACACGCGCCACTTCAGCGATGTAGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAGGTAAGGACGATTCCCAAAGGCCGGGCGGCTGAAGGGCAGCGATTTACAATGGACCCGCTGGGCCCTTCGCGGCG         <  2:241874/148‑1                                                                                                                                                      CCTGCACACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAGGTAAGGACGATTCCCAAAGGCCGGGCGGCTGAAGGGCAGCGATTTACAATGGACCCGCTGGGCCCTTCGCGGCGGA       <  6:346003/149‑1                                                                                                                                                       CTGCACACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAGGTAAGGACGATTCCCAAAGGCCGGGCGGCTGAAGGGCAGCGATTTACAATGGACCCGCTGGGCCCTTCGCGGCGGAG      <  1:332090/149‑1                                                                                                                                                       CTGCACACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAGGTAAGGACGATTCCCAAAGGCCGGGCGGCTGAAGGGCAGCGATTTACAATGGACCCGCTGGGCCCTTCGCGGCGGAG      >  7:251363/1‑149                                                                                                                                                         GCACACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAGGTAAGGACGATTCCCAAAGGCCGGGCGGCTGAAGGGCAGCGATTTACAATGGACCCGCTGGGCCCTTCGCGGCGGAGGC    >  2:37983/1‑149                                                                                                                                                          CACACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAGGTAAGGACGATTCCCAAAGGCCGGGCGGCTGAAGGGCAGCGATTTACAATGGACCCGCTGGGCCCTTCGCGGCGGAGGC    <  3:129184/148‑1                                                                                                                                                          CACACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAGGTAAGGACGATTCCCAAAGGCCGGGCGGCTGAAGGGCAGCGATTTACAATGGACCCGCTGGGCCCTTCGCGGCGGAGG     <  7:56183/147‑1                                                                                                                                                           ACACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAGGTAAGGACGATTCCCAAAGGCCGGGCGGCTGAAGGGCAGCGATTTACAATGGACCCGCTGGGCCCTTCGCGGCGGAGGCCG  >  2:329252/1‑149                                                                                                                                                           ACACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAGGTAAGGACGATTCCCAAAGGCCGGGCGGCTGAAGGGCAGCGATTTACAATGGACCCGCTGGGCCCTTCGCGGCGGAGGCCG  >  6:214391/1‑149                                                                                                                                                                                                                                                                                                                 GAGTGTGATCAGGATGATTCAGGTCTGTCTGCGGATTGCGGAAAGTCATCTAGGTCTCTTTCACTACCGCGGCCTCCGCCGCGAAGGGCCCAGCGGGTCCATTGTAAATCGCTGCCCTTCAGCCGCCCGGCCTTTGGGAATCGTCCTTACCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2193149‑2193303 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctgcaCACGCGCCACTTCAGCGATGTTGATGCGATCCCACATGATCGCCTCATTTAACTTGTCGGTATGCAGGTAAGGACGATTCCCAAAGGCCGGGCGGCTGAAGGGCAGCGATTTACAATGGACCCGCTGGGCCCTTCGCGGCGGAGGCCG  <  NC_002947/2193365‑2193218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.