New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3217405 =	55 (0.930)	3 (0.050)	3/246	NT	5.2%	coding (195/1407 nt)	oprJ	outer membrane protein OprJ
	?	NC_002947	3217500 =	57 (1.020)					coding (290/1407 nt)	oprJ	outer membrane protein OprJ

CCGGTCGGCCCGCTGGATCCGGTACTGCGCACGGGCCTGCTCGATGTCGAGCAGGGTCTGGCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3217501‑3217405 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaccGGGTGCCGGGCTTGAATGCCAGCGCCTCCGGTAATCGCCAGCATTTGCCTGCGGCGCTTTCGAGCGATGGCCGCGAGGGTGTCAGCAGCACCTATCAGGTGGGCTTGTCGCTGCCGGAATACGAAGTGGACCTGTTCGGCCGCGT  >  NC_002947/3217500‑3217644                                                                                                                                                                                                                                                    CCGGTCGGCCCGCTGGATCCGGTACTGCGCACGGGCCTGCTCGATGTCGAGCAGGGTCTGGCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACCGGGTGCCGGGCTTGAATGCCAGCGCCTCCGGTAATCGCCAGCATTTGCCTGC                                                                                               >  8:103191/1‑149  CGGTCGGCCCGCTGGATCCGGTACTGCGCACGGGCCTGCTCGATGTCGAGCAGGGTCTGGCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACAGACCGGGTGCCGGGCTTGAATGCCAGCGCCTCCGGTAATCGCCAGCATTTGCCTGCG                                                                                              >  4:267621/1‑149                 ATCCGGTACTGCGCACGGGCCTGCTCGATGTCGAGCAGGGTCTGGCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACCGGGTGCCGGGCTTGAATGCCAGCGCCTCCGGTAATCGCCAGCATTTGCCTGCGGCGCTTTCGAGCGAT                                                                               <  7:103191/149‑1                                                                                              GACCGGGTGCCGGGCTTGAATGCCAGCGCCTCCGGTAATCGCCAGCATTTGCCTGCGGCGCTTTCGAGCGATGGCCGCGAGGGTGTCAGCAGCACCTATCAGGTGGGCTTGTCGCTGCCGGAATACGAAGTGGACCTGTTCGGCCGCGT  >  7:150290/1‑149                                                                                                                                                                                                                                                    CCGGTCGGCCCGCTGGATCCGGTACTGCGCACGGGCCTGCTCGATGTCGAGCAGGGTCTGGCGCAAGGAGCGGTTGTTGTCCAGCGCGGTACCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3217501‑3217405 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgaccGGGTGCCGGGCTTGAATGCCAGCGCCTCCGGTAATCGCCAGCATTTGCCTGCGGCGCTTTCGAGCGATGGCCGCGAGGGTGTCAGCAGCACCTATCAGGTGGGCTTGTCGCTGCCGGAATACGAAGTGGACCTGTTCGGCCGCGT  >  NC_002947/3217500‑3217644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.