New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3241792 =	54 (0.920)	3 (0.050)	3/248	NT	5.0%	coding (1488/1650 nt)	PP_2838	hypothetical protein
	?	NC_002947	3241839 =	62 (1.100)					coding (1535/1650 nt)	PP_2838	hypothetical protein

GCTCCAGCGCACGTGGCACACCGCGACCGGCAGGCCGTGTTGCCTGCAGAACGCCAGCCAGCGCAGTTGGTTGTCCTGCAGGCGGTCACCGGGCCCCTTGACCTCGACCATGCGATAACGGCCCTGCTCGGGCCAGAACTGAATCAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3241942‑3241792 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgAGGTCAAGGGGCCCGGTGACCGCCTGCAGGACAACCAACTGCGCTGGCTGGCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGA‑GCTACAGCGTAGCGGTGCGCGCCTTGTGTGAG  >  NC_002947/3241839‑3241986                                                                                                                                                                                                                                                                                                              GCTCCAGCGCACGTGGCACACCGCGACCGGCAGGCCGTGTTGCCTGCAGAACGCCAGCCAGCGCAGTTGGTTGTCCTGCAGGCGGTCACCGGGCCCCTTGACCTCGACCATGCGATAACGGCCCTGCTCGGGCCAGAACTGAATCAGGT                                                                                                                                                         >  4:283209/1‑149   TCCAGCGCACGTGGCACACCGCGACCGGCAGGCCGTGTTGCCTGCAGAACGCCAGCCAGCGCAGTTGGTTGTCCTGCAGGCGGTCACCGGGCCCCTTGACCTCGACCATGCGATAACGGCCCTGCTCGGGCCAGAACTGAATCAGGTCG                                                                                                                                                       >  3:291761/1‑149                                                                                                 CTTGACCTCGACCATGCGATAACGGCCCTGCTCGGGCCAGAACTGAATCAGGTCGAGGTCAAGGGGCCCGGTGACCGCCTGCAGGACAACCAACTGCGCTGGCTGGCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCAC                                                           <  5:201904/147‑1                                                                                                 CTTGACCTCGACCATGCGATAACGGCCCTGCTCGGGCCAGAACTGAATCAGGTCGAGGTCAAGGGGCCCGGTGACCGCCTGCAGGACAACCAACTGCGCTGGCTGGCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCAC                                                           >  6:201904/1‑147                                                                                                     ACCTCGACCATGCGATAACGGCCCTGCTCGGGCCAGAACTGAATCAGGTCGAGGTCAAGGGGCCCGGTGACCGCCTGCAGGACAACCAACTGCGCTGGCTGGCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGC                                                     >  2:225816/1‑149                                                                                                                                                    GTCGAGGTCAAGGGGCCCGGTGACCGCCTGCAGGACAACCAACTGCGCTGGCTGGCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGA‑GCTACAGCGTAGCGGTGCGCGCCTTGTGT     <  1:45739/149‑1                                                                                                                                                       GAGGTCAAGGGGCCCGGTGACCGCCTGCAGGACAACCAACTGCGCTGGCTGGCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGACGCTACAGCGTAGCGGTGCGCGCCTTGTGTGA   <  1:225816/149‑1                                                                                                                                                       GAGGTCAAGGGGCCCGGTGACCGCCTGCAGGACAACCAACTGCGCTGGCTGGCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGA‑GCTACAGCGTAGCGGTGCGCGCCTTGTGTGAG  >  4:69275/1‑149                                                                                                                                                       GAGGTCAAGGGGCCCGGTGACCGCCTGCAGGACAACCAACTGCGCTGGCTGGCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGA‑GCTACAGCGTAGCGGTGCGCGCCTTGTGTGA   <  8:144898/148‑1                                                                                                                                                                                                                                                                                                              GCTCCAGCGCACGTGGCACACCGCGACCGGCAGGCCGTGTTGCCTGCAGAACGCCAGCCAGCGCAGTTGGTTGTCCTGCAGGCGGTCACCGGGCCCCTTGACCTCGACCATGCGATAACGGCCCTGCTCGGGCCAGAACTGAATCAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3241942‑3241792 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgAGGTCAAGGGGCCCGGTGACCGCCTGCAGGACAACCAACTGCGCTGGCTGGCGTTCTGCAGGCAACACGGCCTGCCGGTCGCGGTGTGCCACGTGCGCTGGAGCGAAACACCTTGA‑GCTACAGCGTAGCGGTGCGCGCCTTGTGTGAG  >  NC_002947/3241839‑3241986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.