| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3248244 = | 52 (0.880) | 4 (0.070) | 4/246 | NT | 6.7% | coding (178/318 nt) | ureB | urease subunit beta |
| ? | NC_002947 | 3248295 = | 61 (1.090) | coding (229/318 nt) | ureB | urease subunit beta | |||||
GGGAAATATGGCTCATGCCCTGCCCTCCAGCGCGCCCATCACCTTGCCCTGAAAACCATAGACCTCACGCTTGCCGGCGTAAGCCACCAGTTGCACGGTACGCGCCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3248396‑3248244‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCATATTTCCCGTCAGGCCTATGCCGACATGTTCGGGCCCACTGTTGGCGACCGC > NC_002947/3248295‑3248440 GGGAAATATGGCTCATGCCCTGCCCTCCAGCGCGCCCATCACCTTGCCCTGAAAACCATAGACCTCACGCTTGCCGGCGTAAGCCACCAGTTGCACGGTACGCGCCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCA < 3:345570/149‑1 GAAATATGGCTCATGCCCTGCCCTCCAGCGCGCCCATCACCTTGCCCTGAAAACCATAGACCTCACGCTTGCCGGCGTAAGCCACCAGTTGCACGGTACGCGCCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCAGG > 6:51440/1‑149 TACGCGCCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCA > 4:143861/1‑149 CGCCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCATA < 5:62544/147‑1 CGCCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCAGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCATA > 6:62544/1‑147 CCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGG‑‑‑GT‑CAGGAGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCATATTTCCCGT > 8:47366/1‑149 AGGCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCGGGAGGGCAGGGCATGAGCCATATTTCCCGTCAGGCCTATGCCGACATGTTCGGGCCCACTGTTGGCGACC < 7:47366/149‑1 GCGCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCATATTTCCCGTCAGGCCTATGCCGACATGTTCGGGCCCACTGTTGGCGACCGC > 8:214627/1‑149 GGGAAATATGGCTCATGCCCTGCCCTCCAGCGCGCCCATCACCTTGCCCTGAAAACCATAGACCTCACGCTTGCCGGCGTAAGCCACCAGTTGCACGGTACGCGCCTGACCCGGCTCGAAGCGCACGGCAGTGCCGGCCGGGATGTCCAGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3248396‑3248244‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caggcgCGTACCGTGCAACTGGTGGCTTACGCCGGCAAGCGTGAGGTCTATGGTTTTCAGGGCAAGGTGATGGGCGCGCTGGAGGGCAGGGCATGAGCCATATTTCCCGTCAGGCCTATGCCGACATGTTCGGGCCCACTGTTGGCGACCGC > NC_002947/3248295‑3248440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |