New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3435642 =	52 (0.880)	5 (0.090)	5/246	NT	8.0%	coding (554/981 nt)	gpJ	baseplate/tail fiber protein
	?	NC_002947	3435726 =	66 (1.180)					coding (638/981 nt)	gpJ	baseplate/tail fiber protein

GCCGGCGGCCACGCGGGGCCGGTCGGTGATTGGTCGTACTTCCTCGGCCGACAGGGCGGCCTTGACCTTGGCCACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3435793‑3435642 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaAGGTCAAGGCCGCCCTGTCGGCCGAGGAAGTACGACCAATCACCGACCGGCCCCGCGTGGCCGCCGGCGTACCGACTGAGTTCAAGGTGGAGGCCGAGCTGCAGATCGAGGAAGGGCCAGACCCTGACGTGGTGAAGGCCACGGCGC  >  NC_002947/3435726‑3435872                                                                                                                                                                                                                                                                                                             GCCGGCGGCCACGCGGGGCCGGTCGGTGATTGGTCGTACTTCCTCGGCCGACAGGGCGGCCTTGACCTTGGCCACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTGG                                                                                                                                                        >  2:88692/1‑149  cgacCGGCCCCGCGTGGCCGGTCGGTGATTGGTCGTACTTCCTCGGCCGACAGGGCGGCCTTGACCTTGGCCACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGTCAGTGGGTTG                                                                                                                                                         <  4:64647/143‑1  cgacCGGCCCCGCGTGGCCGGTCGGTGATTGGTCGTACTTCCTCGGCCGACAGGGCGGCCTTGACCTTGGCCACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTG                                                                                                                                                         >  3:64647/5‑147  CCGGCGGCCACGCGGGGCCGGTCGGTGATTGGTCGTACTTCCTCGGCCGACAGGGCGGCCTTGACCTTGGCCACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTGGC                                                                                                                                                       <  1:88692/149‑1   gacCGGCCCCGCGTGGCCGGTCGGTGATTGGTCGTACTTCCTCGGCCGACAGGGCGGCCTTGACCTTGGCCACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTGGC                                                                                                                                                       >  4:234672/4‑148    GGCGGCCACGCGGGGCCGGTCGGTGATTGGTCGTACTTCCTCGGCCGACAGGGCGGCCTTGACCTTGGCCACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTGGCCA                                                                                                                                                     <  8:108367/149‑1                                    GTACTTCCTCGGCCGACAGGGCGGCCTTGACCTTGGCCACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTGGCC                                                                                                                                                      >  3:71626/1‑116                                    GTACTTCCTCGGCCGACAGGGCGGCCTTGACCTTGGCCACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTGGCC                                                                                                                                                      <  4:71626/116‑1                                                                  CCTTGGCCACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTGGCCAAGGTCAAGGCCGCCCTGTCGGCCGAGGAAGTACGACCAATCACCGACCGGCCCCGCGTGGCC                                                                                       >  7:187493/1‑149                                                                   CTTGGCCACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTGGCCAAGGTCAAGGCCGCCCTGTCGGCCGAGGAAGTACGACCAATCACCGACCGGCCCCGCGTGGCCG                                                                                      >  4:133532/1‑149                                                                          ACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTGGCCAAGGTCAAGGCCGCCCTGTCGGCCGAGGAAGTACGACCAATCACCGACCGGCCCCGCGTGGCCGCCGGCG                                                                                >  2:150572/1‑148                                                                                         tGTGTTGTGCTGGACATACTGGGCAGGTTGGACAGCGACACATCGCCGGGCAGTGTGTTGGCCAAGGTCAAGGCCGCCCTTTCGGCCGAGTAAGTACGACCAATCACCGACCGGCCCCGCGTGGCCTCCGGCTTACCGACTGAGTTCAA                                                                <  3:133532/148‑1                                                                                                         GACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTGGCCAAGGTCAAGGCCGCCCTGTCGGCCGAGGAAGTACGACCAATCACCGACCGGCCCCGCGTGGCCGCCGGCGTACCGACTGAGTTCAAGGTGGAGGCCGAGCTG                                                <  8:187493/149‑1                                                                                                                                                      CCAAGGTCAAGGCCGCCCTGTCGGCCGAGGAAGTACGACCAATCACCGACCGGCCCCGCGTGGCCGCCGGCGTACCGACTGAGTTCAAGGTGGAGGCCGAGCTGCAGATCGAGGAAGGGCCAGACCCTGACGTGGTGAAGGCCACGGCG   >  6:65521/1‑149                                                                                                                                                       CAAGGTCAAGGCCGCCCTGTCGGCCGAGGAAGTACGACCAATCACCGACCGGCCCCGCGTGGCCGCCGGCGTACCGACTGAGTTCAAGGTGGAGGCCGAGCTGCAGATCGAGGAAGGGCCAGACCCTGACGTGGTGAAGGCCACGGCGC  >  3:113223/1‑149                                                                                                                                                       CAAGGTCAAGGCCGCCCTGTCGGCCGAGGAAGTACGACCAATCACCGACCGGCCCCGCGTGGCCGCCGGCGTACCGACTGAGTTCAAG                                                               <  7:133231/88‑1                                                                                                                                                       CAAGGTCAAGGCCGCCCTGTCGGCCGAGGAAGTACGACCAATCACCGACCGGCCCCGCGTGGCCGCCGGCGTACCGACTGAGTTCAAG                                                               >  8:133231/1‑88                                                                                                                                                                                                                                                                                                             GCCGGCGGCCACGCGGGGCCGGTCGGTGATTGGTCGTACTTCCTCGGCCGACAGGGCGGCCTTGACCTTGGCCACCAGCTGGGCCACGGGTGTGGTGCTGGACAGACTGGGCAGGATGGCCAGCGACACATCGCCGGGCAGTGGGTTGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3435793‑3435642 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccaAGGTCAAGGCCGCCCTGTCGGCCGAGGAAGTACGACCAATCACCGACCGGCCCCGCGTGGCCGCCGGCGTACCGACTGAGTTCAAGGTGGAGGCCGAGCTGCAGATCGAGGAAGGGCCAGACCCTGACGTGGTGAAGGCCACGGCGC  >  NC_002947/3435726‑3435872

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.