New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3969591	NA (NA)	5 (0.090)	4/244	NT	NA	coding (226/321 nt)	PP_3499	transposase
	?	NC_002947	= 3969615	NA (NA)					coding (250/321 nt)	PP_3499	transposase

AACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3969437‑3969591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatcaCTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGT‑GAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGAT  <  NC_002947/3969615‑3969468                                                                                                                                                                                                                                                                                                                  AACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAG                                                                                                                                                             >  5:289527/1‑149  ACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGT                                                                                                                                                            <  2:273136/149‑1          CAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCA                                                                                                                                                       <  6:5425/146‑1          CAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCA                                                                                                                                                       >  5:5425/1‑146           AGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATC                                                                                                                                                        >  1:149652/1‑144           AGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATC                                                                                                                                                        <  2:149652/144‑1                       AACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGG                                                                                                                                       <  1:32760/149‑1                                         AACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGA                                                                                                                     <  1:131069/149‑1                                          ACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGAC                                                                                                                    <  1:153038/149‑1                                               ATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGAC                                                                                                                    <  1:26668/144‑1                                               ATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGAC                                                                                                                    >  2:26668/1‑144                                                                                                                                                     GTGATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGT‑GAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGG         >  2:364115/1‑148                                                                                                                                                       GATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGGTTTTAGCGGGACGAAAGCTGGTAGT‑GAAGCCGCTGCGGGCTGATGTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCAT      >  7:148194/1‑149                                                                                                                                                        ATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGTCGAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCA       <  1:102035/148‑1                                                                                                                                                        ATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGT‑GAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATT     >  8:154979/1‑149                                                                                                                                                        ATCACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGT‑GAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCAT      <  5:94505/148‑1                                                                                                                                                          CACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGT‑GAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTG    <  4:65523/148‑1                                                                                                                                                          CACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGT‑GAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTG    >  3:65523/1‑148                                                                                                                                                           ACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGT‑GAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGAT  <  2:69797/149‑1                                                                                                                                                           ACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGT‑GAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGAT  >  1:244286/1‑149                                                                                                                                                           ACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGT‑GAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGA   <  3:88774/148‑1                                                                                                                                                           ACTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGT‑GAAGCCGCTGCGGGCTGATCTCGATAGAGCAGCAGCCATTTGCGGATGACGTTGGCATTGAT  >  3:64139/1‑149                                                                                                                                                                                                                                                                                                                  AACCGTGTCCAGTGTCGCCATCAACCACGGCATCAATGCCAACGTCATCCGCAAATGGCTGCCGCTCTATCGAGATCAGCCCGCAGCGGCTTCACTACCAGCTTTCGTCCCGCTAAAAGCCGCACCTAAACGGCCAGTCGAAGCGTCAGTGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3969437‑3969591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgatcaCTTGCCCGGCCACGGGCAACTCGATGATCACTGACGCTTCGACTGGCCGTTTAGGTGCGGCTTTTAGCGGGACGAAAGCTGGTAGT‑GAAGCCGCTGCGGGCTGATCTCGATAGAGCGGCAGCCATTTGCGGATGACGTTGGCATTGAT  <  NC_002947/3969615‑3969468

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.