New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4152200	50 (0.850)	4 (0.070)	3/244	NT	7.1%	coding (1024/1263 nt)	PP_3656	aromatic compound‑specific porin
	?	NC_002947	= 4152218	57 (1.020)					coding (1006/1263 nt)	PP_3656	aromatic compound‑specific porin

AAACGAAACACCCTTCGCCGGACCACTCTGAATAACATAAGAGATATCAGTGACCCGCTCCCATTCTTTGCCATCCTCCCCGTTGAGGCGGAGTGAAGCAGCTTGGCGGCTGGTCAGCAGATCAGGATTAACATCATCACCTTTCATGTACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4152048‑4152200 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaccgGGCTTGCTGTTCACCACTCGGTACATGAAAGGTGATGATGTTAATCCTGATCTGCTGACCAGCCGCCAAGCTGCTTCACTCCGCCTCAACGGGGAGGATGGCAAAGAATGGGAGCGGGTCACTGATATCTCTTATGTTATTCAGAG  <  NC_002947/4152218‑4152073                                                                                                                                                                                                                                                                                                             AAACGAAACACCCTTCGCCGGACCACTCTGAATAACATAAGAGATATCAGTGACCCGCTCCCATTCTTTGCCATCCTCCCCGTTGAGGCGGAGTGAAGCAGCTTGGCGGCTGGTCAGCAGATCAGGATTAACATCATCACCTTTCATG                                                                                                                                                         <  7:14475/148‑1    CGAAACAGCCTTCCCCGGACCACTCTGAATAACATACGAGATATCAGTGACCCGCTCCCATTCTTTGCCATCCTCCAGGTTGAGGCGGAGTGAAGCAGCTGGGCGGCTGGTCAGCAGATCAGGATTAACATCATCACCTTTCATGTACC                                                                                                                                                     <  7:46262/149‑1                                   ACATAAGAGATATCAGTGACCCGCTCCCATTCTTTGCCATCCTCCCCGTTGAGGCGGAGTGAAGCAGCTTGGCGGCTGGTCAGCAGATCAGGATTAACATCATCACCTTTCATGTACCGGGCTTGCTGTTCACCACTCGGTACATGAAA                                                                                                                      <  7:67985/149‑1                                    CATAAGAGATATCAGTGACCCGCTCCCATTCTTTGCCATCCTCCCCGTTGAGGCGGAGTGAAGCAGCTTGGCGGCTGGTCAGCAGATCAGGATTAACATCATCACCTTTCATGTACCGGGCTTGCTGTTCACCACTCGGTACATGAAAG                                                                                                                     <  1:207385/149‑1                                                    GACCCGCTCCCATTCTTTGCCATCCTCCCCGTTGAGGCGGAGTGAAGCAGCTTGGCGGCTGGTCAGCAGATCAGGATTAACATCATCACCTTTCATGTACC                                                                                                                                                     >  2:50142/1‑101                                                                       CCATCCTCCCCGTTGAGGCGGAGTGAAGCAGCTTGGCGGCTGGTCAGCAGATCAGGATTAACATCATCACCTTTCATGTACCGGGCTTGCTGTTCACCACTCGGTACATGAAAG                                                                                                                     <  5:294479/114‑1                                                                       CCATCCTCCCCGTTGAGGCGGAGTGAAGCAGCTTGGCGGCTGGTCAGCAGATCAGGATTAACATCATCACCTTTCATGTACCGGGCTTGCTGTTCACCACTCGGTACATGAAAG                                                                                                                     >  6:294479/1‑114                                                                                                                                                       CCGGGCTTGCTGTTCACCACTCGGTACATGAAAGGTGATGATGTTAATCCTGATCTGCTGACCAGCCGCCAAGCTGCTTCACTCCGCCTCAACGGGGAGGATGGCAAAGAATGGGAGCGGGTCACTGATATCTCTTATGTTATTCAGAG  >  3:271227/1‑149                                                                                                                                                                                                                                                                                                             AAACGAAACACCCTTCGCCGGACCACTCTGAATAACATAAGAGATATCAGTGACCCGCTCCCATTCTTTGCCATCCTCCCCGTTGAGGCGGAGTGAAGCAGCTTGGCGGCTGGTCAGCAGATCAGGATTAACATCATCACCTTTCATGTACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4152048‑4152200 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaccgGGCTTGCTGTTCACCACTCGGTACATGAAAGGTGATGATGTTAATCCTGATCTGCTGACCAGCCGCCAAGCTGCTTCACTCCGCCTCAACGGGGAGGATGGCAAAGAATGGGAGCGGGTCACTGATATCTCTTATGTTATTCAGAG  <  NC_002947/4152218‑4152073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.