New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 422567370 (1.190)8 (0.140) 6/246 NT 10.6% coding (425/1173 nt) PP_3705 membrane protein
?NC_002947 = 4225699 68 (1.210)coding (399/1173 nt) PP_3705 membrane protein

TCATTAGGTTACTTCGATAAACCATGTGCTCGTCCGTCTTTGAAATACCATCCCAAAGCCTGGCCAAACCGAGGACGTGCTTCATAACAGATCGAATCGATTCATCAAGGACATCCGGTGTAAGCACACTGTTAACATGCTTCACCTTGGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4225521‑4225673
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtctTCGTCAAATAGGTGAAATTCGACGAGAGACCAAGGTGAAGCATGTTAACAGTGTGCTTACACCGGATGTCCTTGATGAATCGATTCGATCTGTTATGAAGCACGTCCTCGGTTTGGCCAGGCTTTGGGATGGTATTTCAAAGAC  <  NC_002947/4225699‑4225556
                                                                                                                                                                                                                                                                                                         
TCATTAGGTTACTTCGATAAACCATGTGCTCGTCCGTCTTTGAAATACCATCCCAAAGCCTGGCCAAACCGAGGACGTGCTTCATAACAGATCGAATCGATTCATCAAGGACATCCGGTGTAAGCACACTGTTAACATGCTTCACCTTG                                                                                                                                                      <  3:140532/149‑1
     AGGTTACTTCGATAAACCATGTGCTCGTCCGTCTTTGAAATACCATCCCAAAGCCTGGCCAAACCGAGGACGTGCTTCATAACAGATCGAATCGATTCATCAAGGACATCCGGTGTAAGCACACTGTTAACATGCTTCACCTTGGTCT                                                                                                                                                  <  3:199146/148‑1
            TTCGATAAACCATGTGCTCGTCCGTCTTTGAAATACCATCCCAAAGCCTGGCCAAACCGAGGACGTGCTTCATAACAGATCGAATCGATTCATCAAGGACATCCGGTGTAAGCACACTGTTAACATGCTTCACCTTGGTCTTCGTCAAA                                                                                                                                          >  8:226375/1‑149
                                      TTTGAAATACCATCCCAAAGCCTGGCCAAACCGAGGACGTGCTTCATAACAGATCGAATCGATTCATCAAGGACATCCGGTGTAAGCACACTGTTAACATGCTTCACCTTGGTCTTCGTCAAATAGGTGAAATTCGACGAGAGACCAAG                                                                                                                <  3:94128/149‑1
                                        TGAAATACCATCCCAAAGCCTGGCCAAACCGAGGACGTGCTTCATAACAGATCGAATCGATTCATCAAGGACATCCGGTGTAAGCACACTGTTAACATGCTTCACCTTGGTCTTCGTCAAATAGGTGAAATTCGACGAGAGACCAAG                                                                                                                <  7:226375/147‑1
                                        TGAAATACCATCCCAAAGCCTGGCCAAACCGAGGACGTGCTTCATAACAGATCGAATCGATTCATCAAGGACATCCGGTGTAAGCACACTGTTAACATGCTTCACCTTGGTCTTCGTCAAATAGGTGAAATTCGACGAGAGACCAA                                                                                                                 <  5:138836/146‑1
                                        TGAAATACCATCCCAAAGCCTGGCCAAACCGAGGACGTGCTTCATAACAGATCGAATCGATTCATCAAGGACATCCGGTGTAAGCACACTGTTAACATGCTTCACCTTGGTCTTCGTCAAATAGGTGAAATTCGACGAGAGACCAA                                                                                                                 <  7:130520/146‑1
                                                                            GTGCTTCATAACAGATCGAATCGATTCATCAAGGACATCCGGTGTAAGCACACTGTTAACATGCTTCACCTTGGTCTTCGTCAAATAGGTGAAATTCGACGAGAGACCAAGGTGAAGC                                                                                                         <  5:327914/118‑1
                                                                            GTGCTTCATAACAGATCGAATCGATTCATCAAGGACATCCGGTGTAAGCACACTGTTAACATGCTTCACCTTGGTCTTCGTCAAATAGGTGAAATTCGACGAGAGACCAAGGTGAAGC                                                                                                         >  6:327914/1‑118
                                                                              GCTTCATAACAGATCGAATCGATTCATCAAGGACATCCGGTGTAAGCACACTGTTAACATGCTTCACCTTGGTCTTCGTCAAATAGGTGAAATTCGACGAGAGACCAA                                                                                                                 >  2:127839/1‑108
                                                                                                                                                     GTCTTCGTCAAATAGGTGAAATTCGACGAGAGACCAAGGTGAAGCATGTTAACAGTGTGCTTACACCGGATGTCCTTGATGAATCGATTCGATCTGTTATGAAGCACGTCCTCGGTTTGGCCAGGCTTTGGGATGGTATTTCAAAGAC  <  5:349528/148‑1
                                                                                                                                                                                                                                                                                                         
TCATTAGGTTACTTCGATAAACCATGTGCTCGTCCGTCTTTGAAATACCATCCCAAAGCCTGGCCAAACCGAGGACGTGCTTCATAACAGATCGAATCGATTCATCAAGGACATCCGGTGTAAGCACACTGTTAACATGCTTCACCTTGGTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4225521‑4225673
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggtctTCGTCAAATAGGTGAAATTCGACGAGAGACCAAGGTGAAGCATGTTAACAGTGTGCTTACACCGGATGTCCTTGATGAATCGATTCGATCTGTTATGAAGCACGTCCTCGGTTTGGCCAGGCTTTGGGATGGTATTTCAAAGAC  <  NC_002947/4225699‑4225556

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.