New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4536203 =	NA (NA)	5 (0.080)	5/258	NT	12.5%	intergenic (+730/‑85)	PP_4022/PP_4024	hypothetical protein/transposase
	?	NC_002947	4944914 =	35 (0.590)					intergenic (+274/+524)	PP_5673/flhB	D‑alanine‑‑D‑alanine ligase/flagellin export apparatus substrate specificity protein

TAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4536322‑4536203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCC  >  NC_002947/4944914‑4944962                                                                                                                                                                           TAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGAAGAACACGTCGAGCAGGAACGGCGGTA                      >  4:325391/1‑149             ACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCA          <  3:325391/149‑1               TTTGCTGTCGGGGCGCATCATGGCGGGCTGGATACAGAATGAAATCGGGAGCACAGCTTCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGAAGAACAGGTCGAGCAGGAACGGCGGTTTCGGCTACATCAT         >  5:97556/1‑148                 aGCTGTCGGGGCGCATCATGGCTTGCTGGCTCCAGAAAGAAATCTGGAGCACATCATCGGGAATCAGGTGGACTTTTGGAATGTGTGGATGATGGATCCCTTACGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATC        <  6:97556/146‑1                      tcttGGCGCATCATTGCGGGCTGTCTCCAGAAAGAAATCGTGAGCACAGCATAGTGAATCAGTTGGACGGTTGGAATGTGGGGATGATGGATCCCTTACGAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCC  <  8:88566/144‑1                                                                                                                                                                           TAGACTTTTTCGACTTTGCTGTCGGGGCGCATCATGGCGGGCTGGCTCCAGAAAGAAATCGGGAGCACAGCATCGGGAATCAGGTGGACGGTTGGAATGTGGGGATGATGGATCCCTTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4536322‑4536203 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAAGAACACGTCGAGCAGGAACGGCGGTATCGGCAACATCATCATTGCC  >  NC_002947/4944914‑4944962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.