New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808174 =	0 (0.000)	18 (0.420)	10/188	NT	50.0%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	36 (0.840)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

GTAAGAGTTTGTTCTGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4808353‑4808174 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagatcgagcgccgcccgcgcggcgcttcgcgggTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCCCGAAACAAA  <  NC_002947/5988935‑5988795                                                                                                                                                                                                                                                                                                                                    GTAAGAGTTTGTTCTGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCATTGGAATTTTGAGGGGTTTGCCGG‑AGGATTTTCTGCGCGTGT                                                                                                                                                                                 >  2:268304/1‑146  TAAGAGTTTGTTCTGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGAGGCGTTGGAATTTTGAGTGGAAGGCGTTTGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCATCGCCTGTGAGc                                                                                                                                                                             >  4:223728/1‑148    AGAGTTTGTTCTGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATC                                                                                                                                                                           >  5:283469/1‑149               TGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGAGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCATCGCCTGTGAGATCGAGCGCAGCCC                                                                                                                                                                >  7:312206/1‑149                           GTCTTTGTTGTTGGTTTTTCGAGGGGAGGGGGCGTTGGTATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGCAGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTc                                                                                                                                                     <  1:268304/149‑2                                     TTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAAC                                                                                                                                          <  7:258531/149‑1                                                   GGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTT                                                                                                                            <  6:283469/149‑1                                                            GTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCggc                                                                                                                    >  1:328620/1‑145                                                               ggtcTTTTGTTGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGTAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGTGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAg                                                                                                                <  8:312206/144‑2                                                               GGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAgt                                                                                                               >  5:365517/1‑147                                                                  ATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAgt                                                                                                               >  1:265309/1‑144                                                                  ATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAgt                                                                                                               <  2:265309/146‑3                                                                                             GAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCT                                                                                 >  3:19631/1‑149                                                                                              AGTGGACGGCGTTGGAAGTTTGAGGTGTTTGCCGT‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTT                                                                                <  3:223728/149‑1                                                                                                  GACGGCGTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTT                                                                             <  4:19631/148‑1                                                                                                        GTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTA                                                                         <  3:263760/146‑1                                                                                                        GTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTA                                                                         >  4:263760/1‑146                                                                                                        GTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTG                                                                                                       >  3:38430/1‑116                                                                                                        GTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTG                                                                                                       <  4:38430/116‑1                                                                                                               TTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCATGTTTGTACGACGCGATA                                                               >  5:54538/1‑149                                                                                                                    AGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGA                                                           <  2:328620/148‑1                                                                                                                      GTGTTTGCCGG‑AGTATTTTCTGCGCCTGTGAGTTCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGa                                                         <  6:54538/148‑2                                                                                                                           TGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGACATGC                                                    <  4:18277/148‑1                                                                                                                                    GATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGACATGCCCCAAGGcg                                           <  6:365517/149‑3                                                                                                                                                CTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGACATGCCCCAAGGCGGTCGCGCGCaaa                               <  7:31636/149‑4                                                                                                                                                   TGAGATCGAGCGCCTCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGTCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTC                             <  2:314120/149‑1                                                                                                                                                       ATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGac                                                        >  4:241162/1‑115                                                                                                                                                       ATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGac                                                        <  3:241162/117‑3                                                                                                                                                          GAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAG                       <  5:345529/148‑1                                                                                                                                                             CGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAAT                   <  3:71794/149‑1                                                                                                                                                                 GCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGC                                                                                                    <  5:80181/64‑1                                                                                                                                                                 GCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGC                                                                                                    >  6:80181/1‑64                                                                                                                                                                    CGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGC            <  8:324663/149‑1                                                                                                                                                                       GCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAA                    <  6:209356/138‑1                                                                                                                                                                       GCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAA                    >  5:209356/1‑138                                                                                                                                                                              TTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAG                       >  2:218229/1‑128                                                                                                                                                                              TTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAG                       <  1:218229/128‑1                                                                                                                                                                                CGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCCCGAAACAAA  <  7:133895/147‑1                                                                                                                                                                                     GTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGACATGCCCCAag                                              >  2:169119/1‑95                                                                                                                                                                                     GTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGACATGCCCCAag                                              <  1:169119/97‑3                                                                                                                                                                                                                                                                                                                                    GTAAGAGTTTGTTCTGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGG‑AGGATTTTCAGCGCCTGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4808353‑4808174 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagatcgagcgccgcccgcgcggcgcttcgcgggTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCCCGAAACAAA  <  NC_002947/5988935‑5988795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.