New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5279838 = | 50 (0.850) | 3 (0.050) | 3/248 | NT | 5.8% | coding (57/1086 nt) | trmA | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA |
? | NC_002947 | 5279876 = | 50 (0.880) | coding (95/1086 nt) | trmA | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA | |||||
Rejected: Coverage evenness skew score above cutoff. |
CTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGAACGGTGCCAGCAGCTCGCGCAGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5279985‑5279838 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAG > NC_002947/5279876‑5280023 CTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGAACGGTGCCAGCAGCTCGCGCAGCCGG < 7:223628/148‑1 CCGGTTCCGGCGCGCCGAACGGTGCCAGCAGCTCGCGCAGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGC > 1:341068/1‑148 TTCCGGCGCGCCGAACGGTGCCAGCAGCTCGCGCAGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGC < 1:17040/144‑1 TTCCGGCGCGCCGAACGGTGCCAGCAGCTCGCGCAGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGC > 2:17040/1‑144 GCGCAGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCC < 2:341068/149‑1 CGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGC > 6:374180/1‑148 GGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGC > 5:355104/1‑147 GAACCGTCTGTTTTCGACTCACCGCTCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGCCAATCCTGATCGACCATTTCCCCATTGCCAG < 2:55285/149‑1 CTTCTCGCCCGGGGCGAACATGGCGTAGTGGCGCTGGCCATCCTCGCGCCACAGGCGGAACTCGGCGCGCAGGCGGTAATGCTCGCGCGGTGAGTCGAAAACAGCCGGTTCCGGCGCGCCGAACGGTGCCAGCAGCTCGCGCAGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5279985‑5279838 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAG > NC_002947/5279876‑5280023 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |