New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5416755 =	58 (0.990)	5 (0.090)	4/242	NT	8.2%	coding (929/1347 nt)	gudD	bifunctional D‑glucarate dehydratase/L‑idarate epimerase
	?	NC_002947	5416799 =	57 (1.030)					coding (885/1347 nt)	gudD	bifunctional D‑glucarate dehydratase/L‑idarate epimerase

CTGGCCTACGCCGAAGACCCCTGCGGCGCCGAGAACGGTTACTCGGGCCGCGAGGTGATGGCCGAGTTCCGCCGCGCCACCGGGCTGCCCACCGCGACCAACATGATCGCTACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5416909‑5416755 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATGGCCTC  >  NC_002947/5416799‑5416945                                                                                                                                                                                                                                                                                                                CTGGCCTACGCCGAAGACCCCTGCGGCGCCGAGAACGGTTACTCGGGCCGCGAGGTGATGGCCGAGTTCCGCCGCGCCACCGGGCTGCCCACCGCGACCAACATGATCGCTACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACA                                                                                                                                                           <  5:160953/149‑1    GCCTACGCCGAAGACCCCTGCGGCGCCGAGAACGGTTACTCGGGCCGCGAGGTGATGGCCGAGTTCCGCCGCGCCACCGGGCTGCCCACCGCGACCAACATGATCGCTACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAG                                                                                                                                                          <  1:21843/147‑1       TACGCCGAAGACCCCTGCGGCGCCGAGAACGGTTACTCGGGCCGCGAGGTGAAGGCCGAGTTCCGCCGCGCCACCGGGCTGCCCACCGCGATCAACATGATCGCTACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGT                                                                                                                                                     >  2:292503/1‑149                                                                                                           TCGCTACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCG                                                 >  1:40461/1‑149                                                                                                               TACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCG                                              >  1:226507/1‑148                                                                                                               TACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCG                                              >  4:119487/1‑148                                                                                                                 CCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAG                                           >  7:109418/1‑149                                                                                                                                  GGCCATGCCATTCAGTTACAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTT                          <  2:40461/149‑1                                                                                                                                                    CAGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGAT        >  4:121818/1‑149                                                                                                                                                     AGTCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATG       <  1:246552/149‑1                                                                                                                                                       TCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATGGC     <  5:10988/149‑1                                                                                                                                                       TCGGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATGGC     <  6:160953/149‑1                                                                                                                                                         GGTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATGGCCT   >  8:300598/1‑149                                                                                                                                                          GTAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGACACGGCACAGGGCGATGGCCTC  >  7:130415/1‑149                                                                                                                                                           TAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAG                                                                               <  7:167878/71‑1                                                                                                                                                           TAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAG                                                                               >  8:167878/1‑71                                                                                                                                                                                                                                                                                                                CTGGCCTACGCCGAAGACCCCTGCGGCGCCGAGAACGGTTACTCGGGCCGCGAGGTGATGGCCGAGTTCCGCCGCGCCACCGGGCTGCCCACCGCGACCAACATGATCGCTACCGACTGGCGACAGATGGGCCATGCCATTCAGTTACAGTCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5416909‑5416755 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtcggtAGCGATCATGTTGGTCGCGGTGGGCAGCCCGGTGGCGCGGCGGAACTCGGCCATCACCTCGCGGCCCGAGTAACCGTTCTCGGCGCCGCAGGGGTCTTCGGCGTAGGCCAGCACATTGTGCTTGTCACGGCACAGGGCGATGGCCTC  >  NC_002947/5416799‑5416945

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.