New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5644528 =	52 (0.880)	4 (0.070)	4/242	NT	7.6%	intergenic (+9/‑120)	yhiN/PP_4954	FAD/NAD(P)‑binding domain‑containing oxidoreductase/membrane protein
	?	NC_002947	5644617 =	48 (0.870)					intergenic (+98/‑31)	yhiN/PP_4954	FAD/NAD(P)‑binding domain‑containing oxidoreductase/membrane protein

GCGACGCAGTGACTGACGGAACGAGCTCGATGACATGATGGCCTGCCAGGCGGTGATCAGAAGAATACCTTTCAGGGCCGGTTATTGGGGCGCGCAGCGGCCCCAATAACGGCGCCAAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGCTGAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5644683‑5644528 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaaaggTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCGGGTCACCATTGCCCTCACCGGCAGCCTGGCCCTGTGCTGGTACCA  >  NC_002947/5644617‑5644763                                                                                                                                                                                                                                                                                                                 GCGACGCAGTGACTGACGGAACGAGCTCGATGACATGATGGCCTGCCAGGCGGTGATCAGAAGAATACCTTTCAGGGCCGGTTATTGGGGCGCGCAGCGGCCCCAATAACGGCGCCAAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGC                                                                                                                                                            >  6:222833/1‑149        AGTGACTGACGGAACGAGCTCGATGACATGATGGCCTGCCAGGCGGTGATCAGAAGAATACCTTTCAGGGCCGGTTATTGGGGCGCGCAGCGGCCCCAATAACGGCGCCAAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGCTGAAAGG                                                                                                                                                     <  7:262723/149‑1                                  CATGATGGCCTGCCAGGCGGTGATCAGAAGAATACCTTTCAGGGCCGGTTATTGGGGCGCGCAGCGGCCCCAATAACGGCGCCAAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGC                                                                                                                                                            <  3:136755/116‑1                                  CATGATGGCCTGCCAGGCGGTGATCAGAAGAATACCTTTCAGGGCCGGTTATTGGGGCGCGCAGCGGCCCCAATAACGGCGCCAAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGC                                                                                                                                                            >  4:136755/1‑116                                                            GAAGAATACCTTTCAGGGCCGGTTATTGGGGCGCGCAGCGGCCCCAATAACGGCGCCAAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGT                                                                                                 >  1:318922/1‑149                                                               GAATACCTTTCAGGGCCGGTTATTGGGGCGCGCAGCGGCCCCAATAACGGCGCCAAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAG                                                                                              >  1:339840/1‑149                                                                            GGCCGGTTATTGGGGCGCGCAGCGGCCCCAATAACGGCGCCAAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCC                                                                                 <  2:318922/149‑1                                                                                                 GCGGCCCCAATAACGGCGCCAAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGCTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCA                                                            <  2:339840/149‑1                                                                                                                                                     CTGAAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCGGGTCACCATTGCCCTCACCGGCAGCCTGGCCCTGTGCTG        <  3:132911/149‑1                                                                                                                                                        AAAGGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCGGGTCACCATTGCCCTCACCGGCAGCCTGGCCCTGTGCTGGTA     >  5:177842/1‑149                                                                                                                                                        AAAGGTATTCTTCTGATCACCGACTGGCAGGCGATCATGTCATCGAGCGCGTTCCGTCAGTCACTGCGTCTCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCGGGTCACCATTGCCATCACCGGCAGCCAGGCCCTGTGCTTGT      <  8:115628/148‑1                                                                                                                                                           GGTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCGGGTCACCATTGCCCTCACCGGCAGCCTGGCCCTGTGCTGGTACCA  <  4:58331/149‑1                                                                                                                                                                                                                                                                                                                 GCGACGCAGTGACTGACGGAACGAGCTCGATGACATGATGGCCTGCCAGGCGGTGATCAGAAGAATACCTTTCAGGGCCGGTTATTGGGGCGCGCAGCGGCCCCAATAACGGCGCCAAGCACGGGCCAGCAAGAAGCGTTCCGTGCTGCTGAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5644683‑5644528 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaaaggTATTCTTCTGATCACCGCCTGGCAGGCCATCATGTCATCGAGCTCGTTCCGTCAGTCACTGCGTCGCCTGTGGGGCCAAGACAAGTTCAGCTACAGCATCCGGGTCACCATTGCCCTCACCGGCAGCCTGGCCCTGTGCTGGTACCA  >  NC_002947/5644617‑5644763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.