New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5699460 | 60 (1.020) | 4 (0.070) | 4/242 | NT | 6.2% | intergenic (+206/‑63) | PP_5002/phaA | hypothetical protein/poly(3‑hydroxyalkanoate) polymerase |
? | NC_002947 | = 5699488 | 64 (1.160) | intergenic (+234/‑35) | PP_5002/phaA | hypothetical protein/poly(3‑hydroxyalkanoate) polymerase |
TTGCAGACAGCCCAGTGAAGGGCTGTCTTGCGCATTACACGAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5699309‑5699460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtaccggTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGG‑AACTTGCCACACCCATTGGTTACCCGACTTTCGTGTAATG < NC_002947/5699488‑5699341 TTGCAGACAGCCCAGTGAAGGGCTGTCTTGCGCATTACACGAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTAC > 3:250289/1‑149 GCAGACAGCCCAGTGAAGGGCTGTCTTGCGCATTACACGAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCG > 6:346439/1‑149 GCAGACAGCCCAGTGAAGGGCTGTCTTGCGCATTACACGAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACC < 4:253608/148‑1 CAGACAGCCCAGTGAAGGGCTGTCTTGCGCATTACACGAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGG < 5:311358/149‑1 ACGAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGGTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTAC > 6:332429/1‑149 CGAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGGTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACT < 5:332429/149‑1 GCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGGTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGC > 1:65306/1‑96 GCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGGTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGC < 2:65306/96‑1 CCGGTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGGAAACTTGCCACACCCATTGGTTACCCGACTTTCGTG < 1:55389/148‑1 CGGTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGG‑AACTTGCCACACCCATTGGTTACCCGACTTTCGTGTAA > 3:151187/1‑149 CGGTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGG‑AACTTGCCACACCCATTGGTTACCCGACTTTCGTGTAA < 5:340839/149‑1 GTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGG‑AACTTGCCACACCCATTGGTTACCCGACTTTCGTGTAATG > 2:249481/1‑149 GTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGG‑AACTTGCCACACCCATTGGTTACCCGACTTTCGTGT > 5:326421/1‑145 GTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGG‑AACTTGCCACACCCATTGGTTACCCGACTTTCGTGT < 6:326421/145‑1 TTGCAGACAGCCCAGTGAAGGGCTGTCTTGCGCATTACACGAAAGTCGGGTAACCAATGGGTGTGGCAAGTTCCCTGCATGACTTTGCAGGTCGGCAGAACCCACGCAGCACCGCTGTTCCTTATCACTGGTCACCCGAGTAGCAGTACCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5699309‑5699460 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agtaccggTTGCTGTGGCGGGTGCACAGCCCTGAGCCCGGTACTGCTACTCGGGTGACCAGTGATAAGGAACAGCGGTGCTGCGTGGGTTCTGCCGACCTGCAAAGTCATGCAGGG‑AACTTGCCACACCCATTGGTTACCCGACTTTCGTGTAATG < NC_002947/5699488‑5699341 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |