| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5907249 | 64 (1.090) | 6 (0.110) | 6/240 | NT | 8.9% | coding (718/1095 nt) | spuE | spermidine/putrescine ABC transporter substrate‑binding protein |
| ? | NC_002947 | = 5907291 | 64 (1.170) | coding (676/1095 nt) | spuE | spermidine/putrescine ABC transporter substrate‑binding protein | |||||
TTGATGAAGGCATGCGCCTCTTTGACGTTCTTGGCGTCCTTGGGGATCGCCAGCACGTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5907095‑5907249‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacatcaccGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAGGCCAAGGCCCGCGCTGAAGAAGCGAAGAAGGGTGTGAACCTGGCCTACGCCATTCCCAAGGAAGGCGGCAACCTCTGGTTCGACGTGCTG < NC_002947/5907291‑5907145 gTGATGAAGGCATGCGCCTCTTTGACGTTCTTGGCGTCCTTGGGGATCGCCAGCACGTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATAC < 1:317375/148‑1TTGATGAAGGCATGCGCCTCTTTGACGTTCTTGGCGTCCTTGGGGATCGCCAGCACGTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATA > 2:320254/1‑148 GATGAAGGCATGCGCCTCTTTGACGTTCTTGGCGTCCTTGGGGATCGCCAGCACGTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACAT > 3:260102/1‑149 GATGAAGGCATGCGCCTCTTTGACGTTCTTGGCGTCCTTGGGGATCGCCAGCACGTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACAT > 7:249222/1‑149 ATGAAGGCATGCGCCTCTTTGACGTTCTTGGCGTCCTTGGGGATCGCCAGCACGTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACAT > 3:104401/1‑148 GAAGGCATGCGCCTCTTTGACGTTCTTGGCGTCCTTGGGGATCGCCAGCACGTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACATCAC > 2:209028/1‑149 GTTCTTGGCGTCCTTGGGGATCGCCAGCACGTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACATCACCGACCTGGCCAATGGCGACAT > 3:164099/1‑149 AGCACGTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACA < 1:277301/99‑1 AGCACGTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACA > 2:277301/1‑99 GTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACATCACCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGAT > 3:79556/1‑147 GTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACATCACCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGAT < 4:79556/147‑1 CCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACATCACCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCA < 7:120116/149‑1 CCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACATCACCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTC > 8:120116/1‑147 CAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACATCACCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAG < 4:164099/149‑1 ACATCACCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAGGCCAAGGCCCGCGCTGAAGAAGCGAAGAAGGGTGTGAACCTGGCCTACGCCATTCCCAAGGAAGGCGGCAACCTCAGGTTCGAC > 3:353459/1‑149 CATCACCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAGGCCAAGGCCCGCGCTGAAGAAGCGAAGAAGGGTGTGAACCTGGCCTACGCCATTCCCAAGGAAGGCGGCAACCTCTGGTTCGACG > 1:209028/1‑149 CACCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAGGCCAAGGCCCGCGCTGAAGAAGCGAAGAAGGGTGTGAACCTGGCCTACGCCATTCCCAAGGAAGGCGGCAACCTCTGGTTCGACGTG > 5:216699/1‑148 CACCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAGGCCAAGGCCCGCGCTGAAGAAGCGAAGAAGGGTGTGAACCTGGCCTACGCCATTCCCAAGGAAGGCGGCAACCTCTGGTTCGACGTG < 6:216699/148‑1 ACCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAGGCCAAGGCCCGCGCTGAAGAAGCGAAGAAGGGTGTGAACCTGGCCTACGCCATTCCCAAGGAAGGCGGCAACCTCTGGTTCGACGTGCT > 4:260102/1‑149 ACCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAGGCCAAGGCCCGCGCTGAAGAAGCGAAGAAGGGTGTGAACCTGGCCTACGCCATTCCCAAGGAAGGCGGCAACCTCTGGTTCGACGTGCT > 8:249222/1‑149 CCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAGGCCAAGGCCCGCGCTGAAGAAGCGAAGAAGGGTGTGAACCTGGCCTACGCCATTCCCAAGGAAGGCGGCAACCTCTGGTTCGACGTGCTG > 6:1064/1‑149 CCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAGGCCAAGGCCCGCGCTGAAGAAGCGAAGAAGGGTGTGAACCTGGCCTACGCCATTCCCAAGGAAGGCGGCAACCTCTGGTTCGACGTGCTG < 3:140811/149‑1 CCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAGGCCAAGGCCCGCGCTGAAGAAGCGAAGAAGGGTGTGAACCTGGCCTACGCCATTCCCAAGGAAGGCGGCAACCTCTGGTTCGAC > 7:338565/1‑143 CCGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAGGCCAAGGCCCGCGCTGAAGAAGCGAAGAAGGGTGTGAACCTGGCCTACGCCATTCCCAAGGAAGGCGGCAACCTCTGGTTCGAC < 8:338565/143‑1 TTGATGAAGGCATGCGCCTCTTTGACGTTCTTGGCGTCCTTGGGGATCGCCAGCACGTCGAACCAGAGGTTGCCGCCTTCCTTGGGAATGGCGTAGGCCAGGTTCACACCCTTCTTCGCTTCTTCAGCGCGGGCCTTGGCCTGGAATACATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5907095‑5907249‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tacatcaccGACCTGGCCAATGGCGACATCTGCGTCGCGGCAGGTTTCTCGGGTGATGTATTCCAGGCCAAGGCCCGCGCTGAAGAAGCGAAGAAGGGTGTGAACCTGGCCTACGCCATTCCCAAGGAAGGCGGCAACCTCTGGTTCGACGTGCTG < NC_002947/5907291‑5907145 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |